gene03871-v1.0-hybrid (Fragaria vesca)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
gene03871-v1.0-hybrid T010592_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.873 0.873
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.873 0.873
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.873 0.873
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.873 0.873
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.873 0.873
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.873 0.873
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna03871.1-v1.0-hybrid AP2 70 119
mrna03871.1-v1.0-hybrid B3 211 314

Links

Other AP2,B3 family TFs
Other Fragaria vesca TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29738.m001050 Ricinus communis 29738.m001050 I 0.900
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.820
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.840
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.853
RAV1 Arabidopsis thaliana AT1G13260 D 0.873
RAV2 Arabidopsis thaliana AT1G68840 D 0.867
ARF14 Arabidopsis thaliana AT3G25730 D 0.800
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.750
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.747
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.747
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.747
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.819
Bo2g061320 Brassica oleracea Bo2g061320 I 0.833
Bo2g138650 Brassica oleracea Bo2g138650 I 0.800
Bo3g138550 Brassica oleracea Bo3g138550 I 0.847
Bo5g015210 Brassica oleracea Bo5g015210 I 0.873
Bo5g043120 Brassica oleracea Bo5g043120 I 0.859
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.800
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.860
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.853
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.867
Bra011002 Brassica rapa Bra011002 I 0.833
Bra019821 Brassica rapa Bra019821 I 0.873
Bra024735 Brassica rapa Bra024735 I 0.859
Bra025159 Brassica rapa Bra025159 I 0.750
Bra026509 Brassica rapa Bra026509 I 0.787
Bra026917 Brassica rapa Bra026917 I 0.867
Bra038346 Brassica rapa Bra038346 I 0.840
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.764
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.747
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.787
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.816
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.867
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.873
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.873
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.820
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.880
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.907
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.920
Ca_08436 Cicer arietinum Ca_08436 I 0.867
Ca_24123 Cicer arietinum Ca_24123 I 0.893
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.776
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.947
Cla000872 Citrullus lanatus Cla000872 I 0.799
Cla020675 Citrullus lanatus Cla020675 I 0.893
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.804
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.893
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.860
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.753
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.740
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.753
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.873
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.819
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.913
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.913
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.886
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.872
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.867
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.900
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.899
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.819
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.808
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.805
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.824
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.755
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.799
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.812
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.823
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.880
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.824
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.807
GSMUA_Achr9G21470_001 Musa acuminata GSMUA_Achr9G21470_001 N 0.712
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.752
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.773
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.752
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.760
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.796
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.812
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.812
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.860
MDP0000128924 Malus domestica MDP0000128924 I 0.933
MDP0000321569 Malus domestica MDP0000321569 N 0.707
MDP0000939633 Malus domestica MDP0000939633 I 0.947
MDP0000945267 Malus domestica MDP0000945267 I 0.727
mgf019592m Mimulus guttatus mgf019592m I 0.900
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.779
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.738
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.777
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.740
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.758
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.880
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.880
OB01G12600 Oryza brachyantha OB01G12600 I 0.784
OBART01G02610 Oryza barthii OBART01G02610 I 0.747
OBART01G27360 Oryza barthii OBART01G27360 I 0.808
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.747
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.808
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.827
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.747
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.747
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.808
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.827
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.747
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.747
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.808
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.819
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.808
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.826
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.947
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.764
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.747
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.753
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.808
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.747
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.747
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.808
OS01G0140700 Oryza sativa OS01G0140700 I 0.747
OS01G0141000 Oryza sativa OS01G0141000 I 0.747
OS01G0693400 Oryza sativa OS01G0693400 I 0.808
OS05G0549800 Oryza sativa OS05G0549800 I 0.826
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.754
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.822
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.784
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.784
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.732
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.785
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.773
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.778
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.822
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.779
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.900
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.788
PK15652.1 Cannabis sativa PK15652.1 I 0.927
Pm015500 Prunus mume Pm015500 I 0.753
Pm029015 Prunus mume Pm029015 I 0.947
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.900
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.919
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.947
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.740
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.900
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.907
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.907
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.772
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.799
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.707
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.819
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.880
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.867
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.789
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.789
Si001909m.g Setaria italica Si001909m.g I 0.753
Si004045m.g Setaria italica Si004045m.g I 0.784
Si024576m.g Setaria italica Si024576m.g I 0.822
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.812
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.887
TCM_011862 Theobroma cacao TCM_011862 I 0.913
TCM_019508 Theobroma cacao TCM_019508 I 0.781
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.833
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.847
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.880
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.873
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.789
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.782
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.753
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.720
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.753
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.758
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.753
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.753
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.752
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.773
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.893
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.813