Lus10041487.g (Linum usitatissimum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Lus10041487.g T010607_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.820 0.820
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.820 0.820
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.820 0.820
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.820 0.820
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.820 0.820
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.820 0.820
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.760 0.760
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041487 AP2 64 113
Lus10041487 B3 196 308

Links

Other AP2,B3 family TFs
Other Linum usitatissimum TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAV2 Arabidopsis thaliana AT1G68840 D 0.860
RAV1 Arabidopsis thaliana AT1G13260 D 0.820
ARF14 Arabidopsis thaliana AT3G25730 D 0.760
Pm029015 Prunus mume Pm029015 I 0.853
Pm015500 Prunus mume Pm015500 I 0.720
Cla020675 Citrullus lanatus Cla020675 I 0.880
Cla000872 Citrullus lanatus Cla000872 I 0.779
Ca_24123 Cicer arietinum Ca_24123 I 0.860
Ca_08436 Cicer arietinum Ca_08436 I 0.827
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.780
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.880
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.760
29738.m001050 Ricinus communis 29738.m001050 I 0.847
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.840
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.760
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.840
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.853
mgf019592m Mimulus guttatus mgf019592m I 0.813
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.731
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.705
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.880
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.797
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.867
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.758
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.753
Si024576m.g Setaria italica Si024576m.g I 0.822
Si004045m.g Setaria italica Si004045m.g I 0.757
Si001909m.g Setaria italica Si001909m.g I 0.760
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.769
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.769
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.820
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.827
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.792
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.792
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.833
TCM_011862 Theobroma cacao TCM_011862 I 0.847
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.733
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.753
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.769
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.776
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.753
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.753
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.765
TCM_019508 Theobroma cacao TCM_019508 I 0.733
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.753
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.733
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.747
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.772
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.752
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.757
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.770
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.822
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.754
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.743
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.822
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.760
PK15652.1 Cannabis sativa PK15652.1 I 0.867
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.853
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.827
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.833
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.780
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.853
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.853
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.887
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.847
MDP0000945267 Malus domestica MDP0000945267 I 0.733
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.755
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.853
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.773
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.827
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.827
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.847
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.820
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.840
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.847
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.813
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.760
MDP0000939633 Malus domestica MDP0000939633 I 0.847
MDP0000128924 Malus domestica MDP0000128924 I 0.853
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.799
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.886
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.847
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.827
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.860
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.740
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.847
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.765
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.747
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.765
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.740
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.792
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.827
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.839
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.860
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.833
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.765
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.733
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.760
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.758
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.787
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.738
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.824
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.847
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.810
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.785
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.779
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.867
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.796
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.794
Bo3g138550 Brassica oleracea Bo3g138550 I 0.820
Bo2g138650 Brassica oleracea Bo2g138650 I 0.753
Bo2g061320 Brassica oleracea Bo2g061320 I 0.787
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.779
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.740
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.740
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.740
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.727
Bo5g015210 Brassica oleracea Bo5g015210 I 0.833
Bo5g043120 Brassica oleracea Bo5g043120 I 0.812
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.753
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.784
Bra038346 Brassica rapa Bra038346 I 0.800
Bra026917 Brassica rapa Bra026917 I 0.827
Bra026509 Brassica rapa Bra026509 I 0.740
Bra024735 Brassica rapa Bra024735 I 0.812
Bra019821 Brassica rapa Bra019821 I 0.833
Bra011002 Brassica rapa Bra011002 I 0.827
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.820
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.789
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.720
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.740
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.788
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.740
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.740
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.788
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.779
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.788
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.740
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.788
OS01G0140700 Oryza sativa OS01G0140700 I 0.740
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.853
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.852
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.880
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.788
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.833
OS05G0549800 Oryza sativa OS05G0549800 I 0.780
OS01G0693400 Oryza sativa OS01G0693400 I 0.788
OS01G0141000 Oryza sativa OS01G0141000 I 0.740
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.787
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.740
OBART01G02610 Oryza barthii OBART01G02610 I 0.740
OB01G12600 Oryza brachyantha OB01G12600 I 0.770
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.867
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.840
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.765
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.740
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.747
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.745
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.765
OBART01G27360 Oryza barthii OBART01G27360 I 0.788
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.740
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.740
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.787
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.788
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.740
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.799
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.740
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.787
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.781
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
F775_20035 Aegilops tauschii F775_20035 N 0.700