Alligator_sinensis_CCG013281.1 (Alligator sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Alligator_sinensis_CCG013281.1 T015855_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN

NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
0.771 0.965
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN

NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.771 0.965
arid6
M01657_2.00
Danio rerio
NNRWATYN

NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.663 0.659
Arid5b
M01661_2.00
Mus musculus
NDATWHNN

NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.646 0.765
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.646 0.765
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD

HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.646 0.765
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB

VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.646 0.765
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN

NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.506 0.600
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG013281.1 ARID/BRIGHT 120 205

Links

Other ARID/BRIGHT family TFs
Other Alligator sinensis TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SKUD_150104 Saccharomyces kudriavzevii SKUD_150104 I 0.000
22202_YPL021W Saccharomyces mikatae 22202_YPL021W I 0.000
23503_YPL021W Saccharomyces paradoxus 23503_YPL021W I 0.000
24940_YPL021W Saccharomyces bayanus 24940_YPL021W I 0.000