CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Thhalv10007631m.g *(Eutrema salsugineum)* ARID/BRIGHT,Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF01388 (ARID) PF00505 (HMG_box)	IPR001606 IPR000910	Thhalv10007631m.g	T017171_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HMGB15 M06696_2.00	Arabidopsis thaliana	TWTAWWATAWRGTWTW	WAWACYWTATWWTAWA	Dap-seq OMalley et al.(2016) AT1G04880_col_a	0.954	0.954
HMGB15 M06697_2.00	Arabidopsis thaliana	TATAWHATATRGTWT	AWACYATATDWTATA	Dap-seq OMalley et al.(2016) AT1G04880_colamp_a	0.954	0.954
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Thhalv10007631m	ARID/BRIGHT	31	116	DPKLFMGSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILHERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYE
Thhalv10007631m	Sox	259	326	PKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNEEEKSVYQGKAMEDKERYRTEMEDYR

Links
Other ARID/BRIGHT,Sox family TFs
Other *Eutrema salsugineum* TFs