Thhalv10007631m.g (Eutrema salsugineum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Thhalv10007631m.g T017171_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW

WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.954 0.954
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT

AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.954 0.954
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007631m ARID/BRIGHT 31 116
Thhalv10007631m Sox 259 326

Links

Other ARID/BRIGHT,Sox family TFs
Other Eutrema salsugineum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29912.m005337 Ricinus communis 29912.m005337 I 0.000
BGIOSGA002941 Oryza indica BGIOSGA002941 N 0.000
BGIOSGA033976 Oryza indica BGIOSGA033976 I 0.000
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.000
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.000
GSMUA_Achr8G11430_001 Musa acuminata GSMUA_Achr8G11430_001 N 0.000
LPERR05G05410 Leersia perrieri LPERR05G05410 I 0.000
OB05G15870 Oryza brachyantha OB05G15870 I 0.000
OBART05G06380 Oryza barthii OBART05G06380 I 0.000
OGLUM01G06710 Oryza glumaepatula OGLUM01G06710 N 0.000
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I 0.000
ONIVA05G07120 Oryza nivara ONIVA05G07120 I 0.000
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I 0.000
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I 0.000
OS05G0199800 Oryza sativa OS05G0199800 I 0.000
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.000
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.000
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.000
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I 0.000
Sb09g006196 Sorghum bicolor Sb09g006196 N 0.000
Si024546m.g Setaria italica Si024546m.g I 0.000