AT1G50680 (Arabidopsis thaliana)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 AT1G50680 T018400_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G51120
M01696_2.00 		Arabidopsis thaliana
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH8659 		0.927 0.927
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G50680.1 B3 157 268

Links

Other B3 family TFs
Other Arabidopsis thaliana TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.1__4154__AT1G50680.1 Arabidopsis lyrata fgenesh2_kg.1__4154__AT1G50680.1 I 0.948
AT1G51120 Arabidopsis thaliana AT1G51120 D 0.927
Bostr.26675s0076 Boechera stricta Bostr.26675s0076 I 0.917
Carubv10011257m.g Capsella rubella Carubv10011257m.g I 0.917
fgenesh2_kg.1__4181__AT1G51120.1 Arabidopsis lyrata fgenesh2_kg.1__4181__AT1G51120.1 I 0.917
Bostr.26675s0109 Boechera stricta Bostr.26675s0109 I 0.917
Bo6g024770 Brassica oleracea Bo6g024770 I 0.844
Thhalv10012356m.g Eutrema salsugineum Thhalv10012356m.g I 0.837
Thhalv10012152m.g Eutrema salsugineum Thhalv10012152m.g I 0.823
Bo6g022450 Brassica oleracea Bo6g022450 I 0.777
TCM_040397 Theobroma cacao TCM_040397 I 0.774
Carubv10011592m.g Capsella rubella Carubv10011592m.g I 0.771
Cagra.2093s0004 Capsella grandiflora Cagra.2093s0004 I 0.771
Bra030458 Brassica rapa Bra030458 I 0.760
Bo5g081270 Brassica oleracea Bo5g081270 I 0.750
Bo6g022280 Brassica oleracea Bo6g022280 I 0.737
GLYMA20G39140 Glycine max GLYMA20G39140 N 0.731
Bra018869 Brassica rapa Bra018869 I 0.720
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.714
Bra018854 Brassica rapa Bra018854 I 0.711
Thhalv10012161m.g Eutrema salsugineum Thhalv10012161m.g I 0.708