Bra029293 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra029293 T018902_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF2
M06714_2.00 		Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN		 Dap-seq
OMalley et al.(2016)
ARF2_col_v31 		0.865 0.865
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029293.1-P B3 27 126

Links

Other B3 family TFs
Other Brassica rapa TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.865
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.865
mgf020855m Mimulus guttatus mgf020855m I 0.865
mgf015308m Mimulus guttatus mgf015308m I 0.865
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.865
mgf006511m Mimulus guttatus mgf006511m I 0.865
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.865
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.865
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.865
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.865
PK16974.1 Cannabis sativa PK16974.1 I 0.865
MDP0000258032 Malus domestica MDP0000258032 I 0.865
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.865
Cla019614 Citrullus lanatus Cla019614 I 0.854
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.847
TCM_014743 Theobroma cacao TCM_014743 I 0.847
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.847
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.847
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.847
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.847
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.847
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.847
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.847
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.847
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.847
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.847
Pm024588 Prunus mume Pm024588 I 0.847
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.847
Bo9g014770 Brassica oleracea Bo9g014770 I 0.847
Bo2g161810 Brassica oleracea Bo2g161810 I 0.847
Bra035910 Brassica rapa Bra035910 I 0.847
ARF2 Arabidopsis thaliana AT5G62000 D 0.847
Ca_05681 Cicer arietinum Ca_05681 I 0.844
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.844
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.844
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.844
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.837
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.837
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.837
Bo3g108130 Brassica oleracea Bo3g108130 I 0.837
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.837
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.837
Bra010048 Brassica rapa Bra010048 I 0.837
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.837
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.837
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.837
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.827
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.827
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.827
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.827
ARF23 Oryza indica BGIOSGA033901 I 0.827
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.827
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.827
MDP0000310875 Malus domestica MDP0000310875 I 0.827
OS11G0523800 Oryza sativa OS11G0523800 I 0.827
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.827
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.827
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.827
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.827
OB11G21910 Oryza brachyantha OB11G21910 I 0.827
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.827
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.827
OBART11G15270 Oryza barthii OBART11G15270 I 0.827
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.823
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.823
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.823
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.823
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.823
OB12G20020 Oryza brachyantha OB12G20020 I 0.823
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.823
Si000340m.g Setaria italica Si000340m.g I 0.823
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.816
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.816
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.816
evm.TU.contig_31756 Carica papaya evm.TU.contig_31756 I 0.816
TCM_008374 Theobroma cacao TCM_008374 I 0.816
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.816
Si021216m.g Setaria italica Si021216m.g I 0.812
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.812
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.812
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.812
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.806
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.806
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.806
OBART01G42570 Oryza barthii OBART01G42570 I 0.806
F775_31280 Aegilops tauschii F775_31280 I 0.806
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.806
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.806
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.806
ARF4 Oryza sativa OS01G0927600 I 0.806
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.802
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.796
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.796
GSMUA_AchrUn_randomG14770_001 Musa acuminata GSMUA_AchrUn_randomG14770_001 I 0.796
F775_32662 Aegilops tauschii F775_32662 I 0.796
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.796
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.796
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.796
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.796
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.784
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.781
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.781
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.781
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.781
PK12669.1 Cannabis sativa PK12669.1 I 0.781
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.781
OLONG_013033 Oryza longistaminata OLONG_013033 I 0.778
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.776
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.776
Bra025779 Brassica rapa Bra025779 I 0.766
Bra018098 Brassica rapa Bra018098 I 0.766
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.763
MDP0000929655 Malus domestica MDP0000929655 I 0.763
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.763
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.763
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.763
TCM_027113 Theobroma cacao TCM_027113 I 0.763
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.761
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.760
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.760
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.756
BRADI4G07470 Brachypodium distachyon BRADI4G07470 I 0.755
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.753
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.753
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.750
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.750
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.747
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.737
Traes_3DL_1FC3735D9 Triticum aestivum Traes_3DL_1FC3735D9 I 0.732
30128.m008545 Ricinus communis 30128.m008545 I 0.732
POPTR_0001s13110 Populus trichocarpa POPTR_0001s13110 I 0.732
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.729
Si016562m.g Setaria italica Si016562m.g I 0.729
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.729
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.729
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.729
ARF9 Oryza sativa OS04G0442000 I 0.729
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.729
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.729
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.729
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.729
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.729
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.729
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.729
MDP0000138853 Malus domestica MDP0000138853 N 0.726
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.726
OB02G28170 Oryza brachyantha OB02G28170 I 0.726
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.722
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.722
OB04G20880 Oryza brachyantha OB04G20880 I 0.722
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.722
BRADI5G10950 Brachypodium distachyon BRADI5G10950 I 0.722
cassava41779.m1 Manihot esculenta cassava41779.m1 I 0.722
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.719
TCM_005126 Theobroma cacao TCM_005126 I 0.719
Pavir.J22605 Panicum virgatum Pavir.J22605 I 0.719
Traes_3DL_BC7A7E056 Triticum aestivum Traes_3DL_BC7A7E056 I 0.718
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.711
Traes_2BL_1AED96909 Triticum aestivum Traes_2BL_1AED96909 I 0.711
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.708
Ca_23296 Cicer arietinum Ca_23296 I 0.708
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.708
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.708
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.708
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.708
PK02218.1 Cannabis sativa PK02218.1 I 0.708
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.708
Bo4g008150 Brassica oleracea Bo4g008150 I 0.708
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.708
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.708
Si009558m.g Setaria italica Si009558m.g I 0.708
Bra004530 Brassica rapa Bra004530 I 0.708
TCM_016500 Theobroma cacao TCM_016500 I 0.708
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.708
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.704
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.704
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.704
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.704
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.704
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.704
cassava44131.valid.m1 Manihot esculenta cassava44131.valid.m1 I 0.701
cassava47301.m1 Manihot esculenta cassava47301.m1 I 0.701
cassava47300.m1 Manihot esculenta cassava47300.m1 I 0.701
cassava47299.m1 Manihot esculenta cassava47299.m1 I 0.701
cassava44132.valid.m1 Manihot esculenta cassava44132.valid.m1 I 0.701
cassava47297.m1 Manihot esculenta cassava47297.m1 I 0.701
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.701
cassava47296.m1 Manihot esculenta cassava47296.m1 I 0.701
cassava47298.m1 Manihot esculenta cassava47298.m1 I 0.701