Carubv10017779m.g (Capsella rubella)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Carubv10017779m.g T024835_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC1
M06715_2.00
Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA

TCTCTCTCTCTCTCTCTCTCTCTC
Dap-seq
OMalley et al.(2016)
BPC1_col_a
0.787 0.787
BPC1
M06716_2.00
Arabidopsis thaliana
RAGAGAGAGARAGAR

YTCTYTCTCTCTCTY
Dap-seq
OMalley et al.(2016)
BPC1_colamp_a
0.787 0.787
BPC1
M09775_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BPC1_Q2
0.787 0.787
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017779m BBR 1 284

Links

Other BBR family TFs
Other Capsella rubella TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACEP25477 Atta cephalotes ACEP25477 N 0.000
BGIBMGA005140 Bombyx mori BGIBMGA005140 N 0.000
Cflo_05768--XP_001119924.1_APIME Camponotus floridanus Cflo_05768--XP_001119924.1_APIME N 0.000
CLEC007924 Cimex lectularius CLEC007924 N 0.000
kay Drosophila erecta FBgn0103990 I 0.000
GB42049 Apis mellifera GB42049 N 0.000
HMEL009106 Heliconius melpomene HMEL009106 N 0.000
Hsal_06088--XP_001119924.1_APIME Harpegnathos saltator Hsal_06088--XP_001119924.1_APIME I 0.000
ISCW010628 Ixodes scapularis ISCW010628 N 0.000
KGM_09800 Danaus plexippus KGM_09800 N 0.000
L798_15293 Zootermopsis nevadensis L798_15293 N 0.000
NV15740 Nasonia vitripennis NV15740 N 0.000
PHUM237480 Pediculus humanus PHUM237480 N 0.000
PPAI002071 Phlebotomus papatasi PPAI002071 I 0.000
RPRC003541 Rhodnius prolixus RPRC003541 N 0.000
SMAR004079 Strigamia maritima SMAR004079 N 0.000
SPU_021172 Strongylocentrotus purpuratus SPU_021172 I 0.000