Pavir.Ia04968 (Panicum virgatum)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Pavir.Ia04968 T024886_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04968.1.p BBR 1 357
Pavir.Ia04968.2.p BBR 1 357

Links

Other BBR family TFs
Other Panicum virgatum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.949
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.929
Si036337m.g Setaria italica Si036337m.g N 0.928
Traes_4AS_48979CBE1 Triticum aestivum Traes_4AS_48979CBE1 N 0.801
F775_06914 Aegilops tauschii F775_06914 N 0.797
Traes_4DL_AE5093871 Triticum aestivum Traes_4DL_AE5093871 N 0.797
MLOC_13459 Hordeum vulgare MLOC_13459 N 0.794
Sb10g004880 Sorghum bicolor Sb10g004880 N 0.789
Si029480m.g Setaria italica Si029480m.g N 0.779
OS03G0237401 Oryza sativa OS03G0237401 N 0.765
Sb02g009750 Sorghum bicolor Sb02g009750 N 0.759
Sb02g009782 Sorghum bicolor Sb02g009782 N 0.759
GRMZM2G164735 Zea mays GRMZM2G164735 N 0.757
GRMZM2G179366 Zea mays GRMZM2G179366 N 0.754
Pavir.Ba02367 Panicum virgatum Pavir.Ba02367 N 0.749
Pavir.J31488 Panicum virgatum Pavir.J31488 N 0.745
Pavir.Bb00953 Panicum virgatum Pavir.Bb00953 N 0.741
OPUNC03G13410 Oryza punctata OPUNC03G13410 N 0.728
OB10G10530 Oryza brachyantha OB10G10530 N 0.724
LPERR10G00500 Leersia perrieri LPERR10G00500 N 0.715
BRADI3G21380 Brachypodium distachyon BRADI3G21380 N 0.711
LPERR10G00510 Leersia perrieri LPERR10G00510 N 0.711
BGIOSGA032380 Oryza indica BGIOSGA032380 N 0.711
ONIVA10G01080 Oryza nivara ONIVA10G01080 N 0.711
OPUNC10G00600 Oryza punctata OPUNC10G00600 N 0.710
OGLUM10G00620 Oryza glumaepatula OGLUM10G00620 N 0.707
BGIOSGA032378 Oryza indica BGIOSGA032378 N 0.707
OGLUM10G00630 Oryza glumaepatula OGLUM10G00630 N 0.707
OBART10G00640 Oryza barthii OBART10G00640 N 0.703
OB10G10650 Oryza brachyantha OB10G10650 N 0.703