Alligator_sinensis_CCG017418.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG017418.1 T046672_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Myf6
M00120_2.00 		Mus musculus
NCRNNTGNY
RNCANNYGN		 PBM
Badis et al.(2009)
Myf6_3824 		0.914 1.000
Myf6
M01742_2.00 		Mus musculus
RACAGHTGH
DCADCTGTY		 PBM
Weirauch et al.(2014)
pTH5099 		0.914 1.000
MYF6
M02780_2.00 		Homo sapiens
AACARCTGTY
RACAGYTGTT		 SELEX
Jolma et al.(2013)
MYF6_1 		0.914 1.000
MYF6
M04084_2.00 		Homo sapiens
BRHCASSTGWCR
YGWCASSTGDYV		 SELEX
Yin et al.(2017)
MYF6_eDBD_HT-SELEX_1 		0.914 1.000
MYF6
M04085_2.00 		Homo sapiens
NRACASSTGWYV
BRWCASSTGTYN		 SELEX
Yin et al.(2017)
MYF6_eDBD_HT-SELEX_2 		0.914 1.000
MYF6
M05831_2.00 		Homo sapiens
BRACAKNTGNY
RNCANMTGTYV		 SMiLE-seq
Isakova et al.(2017)
MYF6 		0.914 1.000
MYF6
M08717_2.00 		Homo sapiens
CASCTGC
GCAGSTG		 Misc
Kulakovskiy et al.(2013)
MYF6_HUMAN.H11MO.0.C 		0.914 1.000
Myf6
M08767_2.00 		Mus musculus
CASCTGC
GCAGSTG		 Misc
Kulakovskiy et al.(2013)
MYF6_MOUSE.H11MO.0.C 		0.914 1.000
MYF6
M09820_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MRF4_Q3 		0.914 1.000
MYF6
M04086_2.00 		Homo sapiens
BRHCASSTGWCR
YGWCASSTGDYV		 SELEX
Yin et al.(2017)
MYF6_eDBD_Methyl-HT-SELEX_1 		0.914 1.000
MYF6
M04087_2.00 		Homo sapiens
BAACASSTGWYV
BRWCASSTGTTV		 SELEX
Yin et al.(2017)
MYF6_eDBD_Methyl-HT-SELEX_2 		0.914 1.000
MYOG
M04098_2.00 		Homo sapiens
BRACAGCTGWCR
YGWCAGCTGTYV		 SELEX
Yin et al.(2017)
MYOG_eDBD_HT-SELEX_1 		0.883 0.865
MYOG
M04099_2.00 		Homo sapiens
NAACAGCTGTYN
NRACAGCTGTTN		 SELEX
Yin et al.(2017)
MYOG_eDBD_HT-SELEX_2 		0.883 0.865
MYOG
M04102_2.00 		Homo sapiens
NRACARCTGWCR
YGWCAGYTGTYN		 SELEX
Yin et al.(2017)
MYOG_FL_HT-SELEX_1 		0.883 0.865
MYOG
M04103_2.00 		Homo sapiens
NAACARYTGTYN
NRACARYTGTTN		 SELEX
Yin et al.(2017)
MYOG_FL_HT-SELEX_2 		0.883 0.865
Myog
M08061_2.00 		Mus musculus
RRCAGCTGVNN
NNBCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0500.1 		0.883 0.865
MYOG
M08721_2.00 		Homo sapiens
BHVCAGCTGYYNB
VNRRCAGCTGBDV		 Misc
Kulakovskiy et al.(2013)
MYOG_HUMAN.H11MO.0.B 		0.883 0.865
Myog
M08755_2.00 		Mus musculus
BHVCAGCTGYYNB
VNRRCAGCTGBDV		 Misc
Kulakovskiy et al.(2013)
MYOG_MOUSE.H11MO.0.A 		0.883 0.865
Myog
M09469_2.00 		Mus musculus
RACAGCTG
CAGCTGTY		 Misc
Heinz et al.(2010)
C2C12-MyoG_GSE36024 		0.883 0.865
MYOG
M09829_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MYOGENIN_Q6_01 		0.883 0.865
MYOG
M09830_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MYOGENIN_Q6 		0.883 0.865
MYOG
M04100_2.00 		Homo sapiens
BRACAGCTGTCR
YGACAGCTGTYV		 SELEX
Yin et al.(2017)
MYOG_eDBD_Methyl-HT-SELEX_1 		0.883 0.865
MYOG
M04101_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
MYOG_eDBD_Methyl-HT-SELEX_2 		0.883 0.865
MYOG
M04104_2.00 		Homo sapiens
BRACAGCTGTCR
YGACAGCTGTYV		 SELEX
Yin et al.(2017)
MYOG_FL_Methyl-HT-SELEX_1 		0.883 0.865
MYOG
M04105_2.00 		Homo sapiens
NAACAGCTGTYN
NRACAGCTGTTN		 SELEX
Yin et al.(2017)
MYOG_FL_Methyl-HT-SELEX_2 		0.883 0.865
Myf5
M09463_2.00 		Mus musculus
NRRCAGCTGY
RCAGCTGYYN		 Misc
Heinz et al.(2010)
GM-Myf5_GSE24852 		0.841 0.808
MYF5
M09821_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MYF5_Q6 		0.841 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017418.1 bHLH 94 145

Links

Other bHLH family TFs
Other Alligator sinensis TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
myf6 Oryzias latipes ENSORLG00000016261 I 0.914
ENSPANG00000007910 Papio anubis ENSPANG00000007910 I 0.914
ENSONIG00000000007 Oreochromis niloticus ENSONIG00000000007 I 0.914
MYF6 Otolemur garnettii ENSOGAG00000001038 I 0.914
MYF6 Oryctolagus cuniculus ENSOCUG00000001457 I 0.914
ENSFALG00000010503 Ficedula albicollis ENSFALG00000010503 I 0.914
MYF6 Procavia capensis ENSPCAG00000001692 I 0.914
ENSPFOG00000017498 Poecilia formosa ENSPFOG00000017498 I 0.914
MYF6 Pteropus vampyrus ENSPVAG00000003335 I 0.914
Myf6 Rattus norvegicus ENSRNOG00000004878 I 0.914
MYF6 Pan troglodytes ENSPTRG00000005260 I 0.914
ENSPSIG00000012468 Pelodiscus sinensis ENSPSIG00000012468 I 0.914
MYF6 Equus caballus ENSECAG00000018919 I 0.914
ENSPPYG00000004799 Pongo abelii ENSPPYG00000004799 I 0.914
ENSOARG00000015145 Ovis aries ENSOARG00000015145 I 0.914
MYF6 Felis catus ENSFCAG00000015010 I 0.914
MYF6 Gallus gallus ENSGALG00000010936 I 0.914
MYF6 Myotis lucifugus ENSMLUG00000004940 I 0.914
MYF6 Microcebus murinus ENSMICG00000004274 I 0.914
ENSMEUG00000010618 Macropus eugenii ENSMEUG00000010618 I 0.914
MYF6 Gorilla gorilla ENSGGOG00000004369 I 0.914
MYF6 Loxodonta africana ENSLAFG00000016476 I 0.914
myf6 Gasterosteus aculeatus ENSGACG00000020008 I 0.914
MYF6 Macaca mulatta ENSMMUG00000011667 I 0.914
MYF6 Homo sapiens ENSG00000111046 D 0.914
MYF6 Ornithorhynchus anatinus ENSOANG00000004854 I 0.914
ENSNLEG00000005194 Nomascus leucogenys ENSNLEG00000005194 I 0.914
Myf6 Mus musculus ENSMUSG00000035923 D 0.914
MYF6 Monodelphis domestica ENSMODG00000020477 I 0.914
ENSMPUG00000004945 Mustela putorius furo ENSMPUG00000004945 I 0.914
MYF6 Dasypus novemcinctus ENSDNOG00000019387 I 0.914
MYF6 Sorex araneus ENSSARG00000008211 I 0.914
Gfo_R003967 Geospiza fortis Gfo_R003967 I 0.914
Myotis_brandtii_MYF6_10034130 Myotis brandtii Myotis_brandtii_MYF6_10034130 I 0.914
ENSP00000228641 Macaca fascicularis ENSP00000228641 I 0.914
ENSAPLG00000002254 Anas platyrhynchos ENSAPLG00000002254 I 0.914
MYF6 Bos taurus ENSBTAG00000014003 I 0.914
ENSP00000228641-D1 Bos grunniens ENSP00000228641-D1 I 0.914
Pvit_10244 Pogona vitticeps Pvit_10244 I 0.914
AAO11649 Xenopus laevis AAO11649 I 0.914
myf6 Xenopus tropicalis XB-GENE-998203 I 0.914
myf6.S Xenopus laevis XB-GENE-998208 I 0.914
MYF6 Anolis carolinensis ENSACAG00000022851 I 0.914
myf6.L Xenopus laevis XB-GENE-6252334 I 0.914
ENSAMEG00000013207 Ailuropoda melanoleuca ENSAMEG00000013207 I 0.914
ABU42126 Xenopus laevis ABU42126 I 0.914
Afo_R014067 Aptenodytes forsteri Afo_R014067 I 0.914
MYF6 Canis familiaris ENSCAFG00000005805 I 0.914
ENSCSAG00000003893 Chlorocebus sabaeus ENSCSAG00000003893 I 0.914
MYF6 Taeniopygia guttata ENSTGUG00000007751 I 0.914
ENSSTOG00000015808 Ictidomys tridecemlineatus ENSSTOG00000015808 I 0.914
MYF6 Sus scrofa ENSSSCG00000026533 I 0.914
ENSSHAG00000013331 Sarcophilus harrisii ENSSHAG00000013331 I 0.914
myf6 Takifugu rubripes ENSTRUG00000010842 I 0.914
ENSCPOG00000007763 Cavia porcellus ENSCPOG00000007763 I 0.914
MYF6 Vicugna pacos ENSVPAG00000001926 I 0.914
ENSXMAG00000017492 Xiphophorus maculatus ENSXMAG00000017492 I 0.914
Aan_R006110 Calypte anna Aan_R006110 I 0.914
MYF6 Tursiops truncatus ENSTTRG00000014689 I 0.914
MYF6 Callithrix jacchus ENSCJAG00000019339 I 0.914
ENSTSYG00000003275 Tarsius syrichta ENSTSYG00000003275 I 0.914
myf6 Tetraodon nigroviridis ENSTNIG00000011407 I 0.912
ENSLACG00000010731 Latimeria chalumnae ENSLACG00000010731 I 0.884
MYF6 Ochotona princeps ENSOPRG00000008999 I 0.884
Myf6 Dipodomys ordii ENSDORG00000015435 I 0.884
ENSAMXG00000000425 Astyanax mexicanus ENSAMXG00000000425 I 0.884
myf6 Danio rerio ENSDARG00000029830 I 0.884
MYOG Pan troglodytes ENSPTRG00000001866 I 0.883
AAB21580 Xenopus laevis AAB21580 I 0.883
Pvit_15256 Pogona vitticeps Pvit_15256 I 0.883
MYOG Dasypus novemcinctus ENSDNOG00000032549 I 0.883
myog Danio rerio ENSDARG00000009438 I 0.883
ENSLACG00000014874 Latimeria chalumnae ENSLACG00000014874 I 0.883
Myog Rattus norvegicus ENSRNOG00000030743 I 0.883
AAB22139 Xenopus laevis AAB22139 I 0.883
ENSPPYG00000000338 Pongo abelii ENSPPYG00000000338 I 0.883
MYOG Echinops telfairi ENSETEG00000003043 I 0.883
myog Oryzias latipes ENSORLG00000015906 I 0.883
MYOG Ochotona princeps ENSOPRG00000014753 I 0.883
myog Xenopus tropicalis XB-GENE-490105 I 0.883
MYOG Erinaceus europaeus ENSEEUG00000011702 I 0.883
ENSPANG00000016865 Papio anubis ENSPANG00000016865 I 0.883
ENSSHAG00000016307 Sarcophilus harrisii ENSSHAG00000016307 I 0.883
Alligator_sinensis_CCG018754.1 Alligator sinensis Alligator_sinensis_CCG018754.1 I 0.883
MYOG Procavia capensis ENSPCAG00000006860 I 0.883
MYOG Equus caballus ENSECAG00000015955 I 0.883
ENSSSCG00000015475 Sus scrofa ENSSSCG00000015475 I 0.883
MYOG Bos taurus ENSBTAG00000006030 I 0.883
MYOG Callithrix jacchus ENSCJAG00000006443 I 0.883
MYOG Tursiops truncatus ENSTTRG00000000710 I 0.883
ENSTSYG00000009118 Tarsius syrichta ENSTSYG00000009118 I 0.883
MYOG Vicugna pacos ENSVPAG00000010566 I 0.883
ENSXMAG00000003931 Xiphophorus maculatus ENSXMAG00000003931 I 0.883
ENSBTAP00000007923-D1 Bos grunniens ENSBTAP00000007923-D1 I 0.883
Aan_R003723 Calypte anna Aan_R003723 I 0.883
MYOG Canis familiaris ENSCAFG00000010309 I 0.883
ENSP00000241651 Macaca fascicularis ENSP00000241651 I 0.883
Gfo_R007711 Geospiza fortis Gfo_R007711 I 0.883
ENSAMXG00000007437 Astyanax mexicanus ENSAMXG00000007437 I 0.883
ENSSTOG00000028049 Ictidomys tridecemlineatus ENSSTOG00000028049 I 0.883
Ogr08795 Ophisaurus gracilis Ogr08795 I 0.883
ENSCSAG00000014291 Chlorocebus sabaeus ENSCSAG00000014291 I 0.883
MYOG Tupaia belangeri ENSTBEG00000017364 I 0.883
MYOG Taeniopygia guttata ENSTGUG00000001380 I 0.883
myog Takifugu rubripes ENSTRUG00000001200 I 0.883
MYOG Cavia porcellus ENSCPOG00000023459 I 0.883
myog Tetraodon nigroviridis ENSTNIG00000007278 I 0.883
ENSONIG00000019313 Oreochromis niloticus ENSONIG00000019313 I 0.883
ENSPFOG00000017279 Poecilia formosa ENSPFOG00000017279 I 0.883
MYOG Myotis lucifugus ENSMLUG00000016127 I 0.883
MYOG Ornithorhynchus anatinus ENSOANG00000002107 I 0.883
MYOG Gallus gallus ENSGALG00000000172 I 0.883
myog.S Xenopus laevis XB-GENE-865934 I 0.883
myog Gasterosteus aculeatus ENSGACG00000000349 I 0.883
MYOG Felis catus ENSFCAG00000013108 I 0.883
ENSNLEG00000018108 Nomascus leucogenys ENSNLEG00000018108 I 0.883
ENSMMUG00000000064 Macaca mulatta ENSMMUG00000000064 I 0.883
MYOG Anolis carolinensis ENSACAG00000004818 I 0.883
ENSMPUG00000011508 Mustela putorius furo ENSMPUG00000011508 I 0.883
Myog Mus musculus ENSMUSG00000026459 D 0.883
MYOG Homo sapiens ENSG00000122180 D 0.883
MYOG Monodelphis domestica ENSMODG00000001009 I 0.883
MYOG Meleagris gallopavo ENSMGAG00000002212 I 0.883
myog.L Xenopus laevis XB-GENE-6252382 I 0.883
ENSFALG00000002471 Ficedula albicollis ENSFALG00000002471 I 0.883
MYOG Gorilla gorilla ENSGGOG00000002115 I 0.883
MYOG Loxodonta africana ENSLAFG00000013113 I 0.883
MYOG Otolemur garnettii ENSOGAG00000029573 I 0.883
ENSAMEG00000012326 Ailuropoda melanoleuca ENSAMEG00000012326 I 0.883
ENSLOCG00000010722 Lepisosteus oculatus ENSLOCG00000010722 I 0.883
ENSMEUG00000015462 Macropus eugenii ENSMEUG00000015462 I 0.883
MYOG Oryctolagus cuniculus ENSOCUG00000011548 I 0.883
MYOG Pteropus vampyrus ENSPVAG00000013141 I 0.881
MYF6 Tupaia belangeri ENSTBEG00000007822 I 0.874
Brh_R000054 Buceros rhinoceros Brh_R000054 I 0.872
myf5 Danio rerio ENSDARG00000007277 I 0.872
Alligator_sinensis_CCG017419.1 Alligator sinensis Alligator_sinensis_CCG017419.1 I 0.872
ENSXMAG00000017496 Xiphophorus maculatus ENSXMAG00000017496 I 0.872
ENSTGUG00000007755 Taeniopygia guttata ENSTGUG00000007755 I 0.872
MYF5 Gallus gallus ENSGALG00000028091 I 0.872
ENSAPLG00000001124 Anas platyrhynchos ENSAPLG00000001124 I 0.872
ENSMEUG00000010628 Macropus eugenii ENSMEUG00000010628 I 0.872
ENSMGAG00000011091 Meleagris gallopavo ENSMGAG00000011091 I 0.872
MYF5 Monodelphis domestica ENSMODG00000020478 I 0.872
ENSAMXG00000000428 Astyanax mexicanus ENSAMXG00000000428 I 0.872
ENSPFOG00000017488 Poecilia formosa ENSPFOG00000017488 I 0.872
MYF5 Ornithorhynchus anatinus ENSOANG00000004853 I 0.872
ENSFALG00000010507 Ficedula albicollis ENSFALG00000010507 I 0.872
ENSPSIG00000012000 Pelodiscus sinensis ENSPSIG00000012000 I 0.872
myf5 Oryzias latipes ENSORLG00000016257 I 0.872
ENSSHAG00000013391 Sarcophilus harrisii ENSSHAG00000013391 I 0.872
MYF5 Otolemur garnettii ENSOGAG00000001039 I 0.872
ENSONIG00000000077 Oreochromis niloticus ENSONIG00000000077 I 0.872
myod1 Tetraodon nigroviridis ENSTNIG00000002808 I 0.868
Sakowv30008488m.g Saccoglossus kowalevskii Sakowv30008488m.g I 0.868
ENSXMAG00000007430 Xiphophorus maculatus ENSXMAG00000007430 I 0.847
myod1 Gasterosteus aculeatus ENSGACG00000017350 I 0.847
myod1 Gasterosteus aculeatus ENSGACG00000008444 I 0.847
ENSONIG00000010796 Oreochromis niloticus ENSONIG00000010796 I 0.847
myod1 Oryzias latipes ENSORLG00000000694 I 0.847
ENSPFOG00000013532 Poecilia formosa ENSPFOG00000013532 I 0.847
ENSAMXG00000017040 Astyanax mexicanus ENSAMXG00000017040 I 0.847
CLEC002330 Cimex lectularius CLEC002330 I 0.844
TMUE_s0045001800 Trichuris muris TMUE_s0045001800 I 0.844
TTRE_0000002701 Trichuris trichiura TTRE_0000002701 I 0.844
SPU_021119 Strongylocentrotus purpuratus SPU_021119 I 0.844
RPRC009735 Rhodnius prolixus RPRC009735 I 0.844
SBAD_0001285401 Soboliphyme baturini SBAD_0001285401 I 0.844
nRc.2.0.1.g24248 Romanomermis culicivorax nRc.2.0.1.g24248 I 0.844
myf5 Tetraodon nigroviridis ENSTNIG00000011406 I 0.844
D918_04086 Trichuris suis D918_04086 I 0.844
myf5 Takifugu rubripes ENSTRUG00000010781 I 0.844
EFV52759 Trichinella spiralis EFV52759 I 0.844
D917_06339 Trichinella nativa D917_06339 I 0.844
estExt_fgenesh2_pg.C_2260029 Branchiostoma floridae estExt_fgenesh2_pg.C_2260029 I 0.841
myf5.L Xenopus laevis XB-GENE-866267 I 0.841
MYF5 Anolis carolinensis ENSACAG00000014431 I 0.841
Myotis_brandtii_MYF5_10034131 Myotis brandtii Myotis_brandtii_MYF5_10034131 I 0.841
ENSP00000228644 Macaca fascicularis ENSP00000228644 I 0.841
ENSAMEG00000013193 Ailuropoda melanoleuca ENSAMEG00000013193 I 0.841
AAL11024 Xenopus tropicalis AAL11024 I 0.841
myf5 Xenopus tropicalis XB-GENE-493550 I 0.841
estExt_gwp.C_290160 Branchiostoma floridae estExt_gwp.C_290160 I 0.841
MYF5 Sorex araneus ENSSARG00000008217 I 0.841
MYF5 Oryctolagus cuniculus ENSOCUG00000025477 I 0.841
ENSOARG00000015159 Ovis aries ENSOARG00000015159 I 0.841
MYF5 Felis catus ENSFCAG00000015011 I 0.841
MYF5 Echinops telfairi ENSETEG00000011255 I 0.841
MYF5 Ochotona princeps ENSOPRG00000009007 I 0.841
MYF5 Procavia capensis ENSPCAG00000001722 I 0.841
MYF5 Erinaceus europaeus ENSEEUG00000011612 I 0.841
ENSPANG00000020394 Papio anubis ENSPANG00000020394 I 0.841
ENSNLEG00000005207 Nomascus leucogenys ENSNLEG00000005207 I 0.841
MYF5 Homo sapiens ENSG00000111049 D 0.841
ENSMICG00000011211 Microcebus murinus ENSMICG00000011211 I 0.841
MYF5 Gorilla gorilla ENSGGOG00000004366 I 0.841
MYF5 Loxodonta africana ENSLAFG00000016473 I 0.841
MYF5 Myotis lucifugus ENSMLUG00000004943 I 0.841
MYF5 Macaca mulatta ENSMMUG00000011669 I 0.841
Myf5 Mus musculus ENSMUSG00000000435 D 0.841
ENSMPUG00000004935 Mustela putorius furo ENSMPUG00000004935 I 0.841
MYF5 Equus caballus ENSECAG00000020047 I 0.841
ENSPPYG00000004800 Pongo abelii ENSPPYG00000004800 I 0.841
ENSTSYG00000003282 Tarsius syrichta ENSTSYG00000003282 I 0.841
MYF5 Callithrix jacchus ENSCJAG00000019340 I 0.841
MYF5 Cavia porcellus ENSCPOG00000007766 I 0.841
MYF5 Tursiops truncatus ENSTTRG00000014691 I 0.841
MYF5 Choloepus hoffmanni ENSCHOG00000008319 I 0.841
MYF5 Canis familiaris ENSCAFG00000005808 I 0.841
MYF5 Vicugna pacos ENSVPAG00000001927 I 0.841
ENSCSAG00000003889 Chlorocebus sabaeus ENSCSAG00000003889 I 0.841
MYF5 Tupaia belangeri ENSTBEG00000008363 I 0.841
MYF5 Dasypus novemcinctus ENSDNOG00000034747 I 0.841
MYF5 Pan troglodytes ENSPTRG00000005261 I 0.841
Myf5 Dipodomys ordii ENSDORG00000015437 I 0.841
MYF5 Pteropus vampyrus ENSPVAG00000003336 I 0.841
Myf5 Rattus norvegicus ENSRNOG00000004768 I 0.841
ENSSTOG00000015810 Ictidomys tridecemlineatus ENSSTOG00000015810 I 0.841
MYF5 Sus scrofa ENSSSCG00000000937 I 0.841
MYF5 Bos taurus ENSBTAG00000026972 I 0.841