Gorai.001G074900 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.001G074900 T049920_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.853 0.804
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.853 0.745
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.853 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G074900.1 bHLH 159 209

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla018783 Citrullus lanatus Cla018783 I 0.888
VIT_17s0000g03580 Vitis vinifera VIT_17s0000g03580 I 0.888
Pm025178 Prunus mume Pm025178 I 0.888
29974.m000242 Ricinus communis 29974.m000242 I 0.888
Cucsa.111110 Cucumis sativus Cucsa.111110 I 0.888
TCM_012362 Theobroma cacao TCM_012362 I 0.888
Solyc03g119390.2 Solanum lycopersicum Solyc03g119390.2 N 0.888
PGSC0003DMG400005725 Solanum tuberosum PGSC0003DMG400005725 N 0.888
POPTR_0012s05210 Populus trichocarpa POPTR_0012s05210 I 0.888
POPTR_0015s03760 Populus trichocarpa POPTR_0015s03760 I 0.888
PRUPE_ppa015301mg Prunus persica PRUPE_ppa015301mg I 0.888
mgf013353m Mimulus guttatus mgf013353m I 0.888
Bostr.3288s0027 Boechera stricta Bostr.3288s0027 N 0.888
MDP0000879337 Malus domestica MDP0000879337 I 0.888
SapurV1A.0530s0010 Salix purpurea SapurV1A.0530s0010 I 0.888
SapurV1A.0719s0010 Salix purpurea SapurV1A.0719s0010 I 0.888
SapurV1A.1621s0020 Salix purpurea SapurV1A.1621s0020 I 0.888
Gorai.006G194500 Gossypium raimondii Gorai.006G194500 I 0.888
Gorai.006G060400 Gossypium raimondii Gorai.006G060400 I 0.888
Cagra.0876s0016 Capsella grandiflora Cagra.0876s0016 N 0.888
Carubv10020802m.g Capsella rubella Carubv10020802m.g N 0.888
Eucgr.B00731 Eucalyptus grandis Eucgr.B00731 I 0.888
evm.TU.supercontig_3.503 Carica papaya evm.TU.supercontig_3.503 N 0.888
BEE3 Arabidopsis lyrata fgenesh2_kg.2__1650__AT1G73830.1 N 0.888
Cla019256 Citrullus lanatus Cla019256 I 0.888
BEE3 Arabidopsis thaliana AT1G73830 N 0.888
chr4.CM0042.750.nc Lotus japonicus chr4.CM0042.750.nc N 0.885
GLYMA08G04661 Glycine max GLYMA08G04661 N 0.885
GLYMA09G31580 Glycine max GLYMA09G31580 I 0.885
GLYMA07G10311 Glycine max GLYMA07G10311 I 0.885
Lus10009673.g Linum usitatissimum Lus10009673.g I 0.885
Ca_13025 Cicer arietinum Ca_13025 I 0.885
Lus10009034.g Linum usitatissimum Lus10009034.g I 0.885
GLYMA05G35060 Glycine max GLYMA05G35060 N 0.885
gene25151-v1.0-hybrid Fragaria vesca gene25151-v1.0-hybrid I 0.876
Bo6g118140 Brassica oleracea Bo6g118140 N 0.875
Carubv10009894m.g Capsella rubella Carubv10009894m.g N 0.875
PGSC0003DMG400005388 Solanum tuberosum PGSC0003DMG400005388 I 0.875
Gorai.007G005700 Gossypium raimondii Gorai.007G005700 I 0.875
Bra025910 Brassica rapa Bra025910 N 0.875
Cagra.0909s0019 Capsella grandiflora Cagra.0909s0019 N 0.875
Solyc12g036470.1 Solanum lycopersicum Solyc12g036470.1 I 0.875
Bra015960 Brassica rapa Bra015960 N 0.875
Bo2g080780 Brassica oleracea Bo2g080780 N 0.875
Bostr.7128s0442 Boechera stricta Bostr.7128s0442 N 0.875
Bo5g025360 Brassica oleracea Bo5g025360 N 0.875
BEE1 Arabidopsis thaliana AT1G18400 N 0.875
Bra008113 Brassica rapa Bra008113 N 0.875
fgenesh1_pm.C_scaffold_1001571 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001571 N 0.875
Thhalv10008517m.g Eutrema salsugineum Thhalv10008517m.g N 0.875
Thhalv10019010m.g Eutrema salsugineum Thhalv10019010m.g N 0.875
cassava32072.m1 Manihot esculenta cassava32072.m1 N 0.873
mgf017044m Mimulus guttatus mgf017044m I 0.864
Eucgr.K02229 Eucalyptus grandis Eucgr.K02229 I 0.864
MTR_6g084120 Medicago truncatula MTR_6g084120 N 0.861
Aquca_041_00009 Aquilegia coerulea Aquca_041_00009 I 0.860
MDP0000779358 Malus domestica MDP0000779358 N 0.860
Thhalv10023643m.g Eutrema salsugineum Thhalv10023643m.g I 0.853
Thhalv10020729m.g Eutrema salsugineum Thhalv10020729m.g I 0.853
Cagra.0133s0077 Capsella grandiflora Cagra.0133s0077 I 0.853
AMTR_s00133p00027110 Amborella trichopoda AMTR_s00133p00027110 I 0.853
BGIOSGA018982 Oryza indica BGIOSGA018982 I 0.853
Bostr.10040s0284 Boechera stricta Bostr.10040s0284 I 0.853
Bostr.15774s0231 Boechera stricta Bostr.15774s0231 I 0.853
Bostr.22252s0299 Boechera stricta Bostr.22252s0299 I 0.853
Bostr.2392s0023 Boechera stricta Bostr.2392s0023 I 0.853
Thhalv10014242m.g Eutrema salsugineum Thhalv10014242m.g I 0.853
Cagra.4331s0005 Capsella grandiflora Cagra.4331s0005 I 0.853
Carubv10026241m.g Capsella rubella Carubv10026241m.g I 0.853
Carubv10020803m.g Capsella rubella Carubv10020803m.g I 0.853
Carubv10026852m.g Capsella rubella Carubv10026852m.g I 0.853
Ciclev10021606m.g Citrus clementina Ciclev10021606m.g I 0.853
Ciclev10031135m.g Citrus clementina Ciclev10031135m.g I 0.853
Thhalv10008474m.g Eutrema salsugineum Thhalv10008474m.g I 0.853
BHLH137 Arabidopsis thaliana AT5G50915 I 0.853
Aquca_080_00003 Aquilegia coerulea Aquca_080_00003 I 0.853
Cagra.7393s0006 Capsella grandiflora Cagra.7393s0006 I 0.853
SapurV1A.0477s0260 Salix purpurea SapurV1A.0477s0260 I 0.853
Carubv10013649m.g Capsella rubella Carubv10013649m.g I 0.853
Cagra.13153s0001 Capsella grandiflora Cagra.13153s0001 I 0.853
Aquca_034_00013 Aquilegia coerulea Aquca_034_00013 I 0.853
cassava23015.valid.m1 Manihot esculenta cassava23015.valid.m1 I 0.853
cassava3137.m1 Manihot esculenta cassava3137.m1 I 0.853
SapurV1A.0672s0080 Salix purpurea SapurV1A.0672s0080 I 0.853
cassava6039.valid.m1 Manihot esculenta cassava6039.valid.m1 I 0.853
cassava22865.valid.m1 Manihot esculenta cassava22865.valid.m1 I 0.853
cassava19985.m1 Manihot esculenta cassava19985.m1 I 0.853
30147.m014428 Ricinus communis 30147.m014428 I 0.853
PK23355.1 Cannabis sativa PK23355.1 I 0.853
cassava1662.valid.m1 Manihot esculenta cassava1662.valid.m1 I 0.853
cassava19743.m1 Manihot esculenta cassava19743.m1 I 0.853
Cucsa.005360 Cucumis sativus Cucsa.005360 I 0.853
PK14657.1 Cannabis sativa PK14657.1 I 0.853
PDK_20s1612611g001 Phoenix dactylifera PDK_20s1612611g001 I 0.853
mgf013689m Mimulus guttatus mgf013689m I 0.853
chr3.CM0241.190.nd Lotus japonicus chr3.CM0241.190.nd I 0.853
mgf024478m Mimulus guttatus mgf024478m I 0.853
BGIOSGA028884 Oryza indica BGIOSGA028884 I 0.853
mgf001520m Mimulus guttatus mgf001520m I 0.853
Cucsa.134770 Cucumis sativus Cucsa.134770 I 0.853
Cucsa.197380 Cucumis sativus Cucsa.197380 I 0.853
Cucsa.387680 Cucumis sativus Cucsa.387680 I 0.853
Ciclev10032412m.g Citrus clementina Ciclev10032412m.g I 0.853
BHLH78 Arabidopsis thaliana AT5G48560 D 0.853
AMTR_s00016p00138470 Amborella trichopoda AMTR_s00016p00138470 I 0.853
Lus10013284.g Linum usitatissimum Lus10013284.g I 0.853
Lus10030807.g Linum usitatissimum Lus10030807.g I 0.853
Lus10033120.g Linum usitatissimum Lus10033120.g I 0.853
LjT09O11.110.nd Lotus japonicus LjT09O11.110.nd I 0.853
Lus10003172.g Linum usitatissimum Lus10003172.g I 0.853
Gorai.008G053100 Gossypium raimondii Gorai.008G053100 I 0.853
Gorai.008G209900 Gossypium raimondii Gorai.008G209900 I 0.853
Gorai.011G150200 Gossypium raimondii Gorai.011G150200 I 0.853
Lus10002337.g Linum usitatissimum Lus10002337.g I 0.853
MDP0000195579 Malus domestica MDP0000195579 I 0.853
MDP0000205113 Malus domestica MDP0000205113 I 0.853
orange1.1g024344m.g Citrus sinensis orange1.1g024344m.g I 0.853
orange1.1g044652m.g Citrus sinensis orange1.1g044652m.g I 0.853
SapurV1A.0007s0010 Salix purpurea SapurV1A.0007s0010 I 0.853
SapurV1A.0113s0360 Salix purpurea SapurV1A.0113s0360 I 0.853
orange1.1g023847m.g Citrus sinensis orange1.1g023847m.g I 0.853
SapurV1A.1596s0040 Salix purpurea SapurV1A.1596s0040 I 0.853
MDP0000205807 Malus domestica MDP0000205807 I 0.853
MDP0000215269 Malus domestica MDP0000215269 I 0.853
MDP0000282600 Malus domestica MDP0000282600 I 0.853
MDP0000299846 Malus domestica MDP0000299846 I 0.853
Gorai.007G157700 Gossypium raimondii Gorai.007G157700 I 0.853
Gorai.007G044400 Gossypium raimondii Gorai.007G044400 I 0.853
BHLH62 Arabidopsis thaliana AT3G07340 I 0.853
evm.TU.supercontig_4.112 Carica papaya evm.TU.supercontig_4.112 I 0.853
evm.TU.supercontig_5.303 Carica papaya evm.TU.supercontig_5.303 I 0.853
PK28434.1 Cannabis sativa PK28434.1 I 0.853
evm.TU.supercontig_203.5 Carica papaya evm.TU.supercontig_203.5 I 0.853
Eucgr.K02908 Eucalyptus grandis Eucgr.K02908 I 0.853
SapurV1A.0161s0140 Salix purpurea SapurV1A.0161s0140 I 0.853
Eucgr.B03392 Eucalyptus grandis Eucgr.B03392 I 0.853
Eucgr.K02109 Eucalyptus grandis Eucgr.K02109 I 0.853
chr1.LjT06C08.10.nc Lotus japonicus chr1.LjT06C08.10.nc I 0.853
Thhalv10004031m.g Eutrema salsugineum Thhalv10004031m.g I 0.853
evm.TU.supercontig_8.103 Carica papaya evm.TU.supercontig_8.103 I 0.853
LjT17I13.20.nd Lotus japonicus LjT17I13.20.nd I 0.853
BPE Arabidopsis thaliana AT1G59640 D 0.853
Gorai.006G225700 Gossypium raimondii Gorai.006G225700 I 0.853
chr4.CM0175.440.nc Lotus japonicus chr4.CM0175.440.nc I 0.853
Gorai.005G188700 Gossypium raimondii Gorai.005G188700 I 0.853
Gorai.001G103300 Gossypium raimondii Gorai.001G103300 I 0.853
gene09544-v1.0-hybrid Fragaria vesca gene09544-v1.0-hybrid I 0.853
gene17430-v1.0-hybrid Fragaria vesca gene17430-v1.0-hybrid I 0.853
30147.m014038 Ricinus communis 30147.m014038 I 0.853
Eucgr.B00385 Eucalyptus grandis Eucgr.B00385 I 0.853
cassava1299.valid.m1 Manihot esculenta cassava1299.valid.m1 I 0.853
OBART05G00180 Oryza barthii OBART05G00180 I 0.853
OB05G10240 Oryza brachyantha OB05G10240 I 0.853
OBART08G18760 Oryza barthii OBART08G18760 I 0.853
OGLUM05G00230 Oryza glumaepatula OGLUM05G00230 I 0.853
OLONG_004875 Oryza longistaminata OLONG_004875 I 0.853
OGLUM08G19740 Oryza glumaepatula OGLUM08G19740 I 0.853
MTR_8g099880 Medicago truncatula MTR_8g099880 I 0.853
MTR_8g062240 Medicago truncatula MTR_8g062240 I 0.853
LPERR08G15600 Leersia perrieri LPERR08G15600 I 0.853
LPERR05G00200 Leersia perrieri LPERR05G00200 I 0.853
MTR_3g498825 Medicago truncatula MTR_3g498825 I 0.853
MTR_7g053410 Medicago truncatula MTR_7g053410 I 0.853
MTR_8g012290 Medicago truncatula MTR_8g012290 I 0.853
OMERI08G14790 Oryza meridionalis OMERI08G14790 I 0.853
ONIVA05G00200 Oryza nivara ONIVA05G00200 I 0.853
PGSC0003DMG400020807 Solanum tuberosum PGSC0003DMG400020807 I 0.853
PGSC0003DMG400019861 Solanum tuberosum PGSC0003DMG400019861 I 0.853
PGSC0003DMG400027042 Solanum tuberosum PGSC0003DMG400027042 I 0.853
PGSC0003DMG401022600 Solanum tuberosum PGSC0003DMG401022600 I 0.853
PGSC0003DMG401024463 Solanum tuberosum PGSC0003DMG401024463 I 0.853
Bo3g024010 Brassica oleracea Bo3g024010 I 0.853
ORUFI08G20920 Oryza rufipogon ORUFI08G20920 I 0.853
OPUNC05G00160 Oryza punctata OPUNC05G00160 I 0.853
ONIVA12G18400 Oryza nivara ONIVA12G18400 I 0.853
ORGLA05G0001800 Oryza glaberrima ORGLA05G0001800 I 0.853
ORGLA08G0163300 Oryza glaberrima ORGLA08G0163300 I 0.853
ORUFI05G00210 Oryza rufipogon ORUFI05G00210 I 0.853
GSMUA_Achr9G01040_001 Musa acuminata GSMUA_Achr9G01040_001 I 0.853
GSMUA_Achr6G27780_001 Musa acuminata GSMUA_Achr6G27780_001 I 0.853
GLYMA02G02934 Glycine max GLYMA02G02934 I 0.853
GLYMA01G04610 Glycine max GLYMA01G04610 I 0.853
GLYMA02G02942 Glycine max GLYMA02G02942 I 0.853
GLYMA03G21770 Glycine max GLYMA03G21770 I 0.853
GLYMA04G34660 Glycine max GLYMA04G34660 I 0.853
fgenesh2_kg.8__970__AT5G50915.1 Arabidopsis lyrata fgenesh2_kg.8__970__AT5G50915.1 I 0.853
fgenesh2_kg.8__734__AT5G48560.1 Arabidopsis lyrata fgenesh2_kg.8__734__AT5G48560.1 I 0.853
Bra020691 Brassica rapa Bra020691 I 0.853
Bra019935 Brassica rapa Bra019935 I 0.853
Bra022753 Brassica rapa Bra022753 I 0.853
Bra029640 Brassica rapa Bra029640 I 0.853
Bra037478 Brassica rapa Bra037478 I 0.853
GLYMA04G37690 Glycine max GLYMA04G37690 I 0.853
GLYMA06G17420 Glycine max GLYMA06G17420 I 0.853
GSMUA_Achr10G18410_001 Musa acuminata GSMUA_Achr10G18410_001 I 0.853
GSMUA_Achr10G12020_001 Musa acuminata GSMUA_Achr10G12020_001 I 0.853
GSMUA_Achr1G27010_001 Musa acuminata GSMUA_Achr1G27010_001 I 0.853
GSMUA_Achr2G21460_001 Musa acuminata GSMUA_Achr2G21460_001 I 0.853
GSMUA_Achr6G16480_001 Musa acuminata GSMUA_Achr6G16480_001 I 0.853
GLYMA18G32560 Glycine max GLYMA18G32560 I 0.853
GLYMA17G10290 Glycine max GLYMA17G10290 I 0.853
GLYMA08G01210 Glycine max GLYMA08G01210 I 0.853
GLYMA06G20000 Glycine max GLYMA06G20000 I 0.853
GLYMA08G40541 Glycine max GLYMA08G40541 I 0.853
GLYMA08G46040 Glycine max GLYMA08G46040 I 0.853
GLYMA16G10620 Glycine max GLYMA16G10620 I 0.853
POPTR_0002s24990 Populus trichocarpa POPTR_0002s24990 I 0.853
OS05G0103000 Oryza sativa OS05G0103000 I 0.853
Ca_01402 Cicer arietinum Ca_01402 I 0.853
VIT_17s0000g05370 Vitis vinifera VIT_17s0000g05370 I 0.853
Ca_11728 Cicer arietinum Ca_11728 I 0.853
Ca_12391 Cicer arietinum Ca_12391 I 0.853
Ca_17591 Cicer arietinum Ca_17591 I 0.853
Bo5g010880 Brassica oleracea Bo5g010880 I 0.853
VIT_17s0000g00430 Vitis vinifera VIT_17s0000g00430 I 0.853
TCM_014729 Theobroma cacao TCM_014729 I 0.853
TCM_045701 Theobroma cacao TCM_045701 I 0.853
TCM_045748 Theobroma cacao TCM_045748 I 0.853
POPTR_0008s19510 Populus trichocarpa POPTR_0008s19510 I 0.853
Ca_18285 Cicer arietinum Ca_18285 I 0.853
Ca_19529 Cicer arietinum Ca_19529 I 0.853
Cla022234 Citrullus lanatus Cla022234 I 0.853
Pm006609 Prunus mume Pm006609 I 0.853
Pm024636 Prunus mume Pm024636 I 0.853
Bo3g024020 Brassica oleracea Bo3g024020 I 0.853
Pm029883 Prunus mume Pm029883 I 0.853
29447.m000032 Ricinus communis 29447.m000032 I 0.853
Cla002680 Citrullus lanatus Cla002680 I 0.853
Cla015140 Citrullus lanatus Cla015140 I 0.853
Al_scaffold_0003_757 Arabidopsis lyrata Al_scaffold_0003_757 I 0.853
Cla019439 Citrullus lanatus Cla019439 I 0.853
TCM_002737 Theobroma cacao TCM_002737 I 0.853
VIT_01s0026g01140 Vitis vinifera VIT_01s0026g01140 I 0.853
PRUPE_ppa009757mg Prunus persica PRUPE_ppa009757mg I 0.853
ZCW32 Arabidopsis lyrata scaffold_200689.1 I 0.853
Solyc03g097820.1 Solanum lycopersicum Solyc03g097820.1 I 0.853
29736.m002076 Ricinus communis 29736.m002076 I 0.853
PRUPE_ppa009543mg Prunus persica PRUPE_ppa009543mg I 0.853
PRUPE_ppa003350mg Prunus persica PRUPE_ppa003350mg I 0.853
POPTR_0010s04920 Populus trichocarpa POPTR_0010s04920 I 0.853
POPTR_0012s10670 Populus trichocarpa POPTR_0012s10670 I 0.853
Bo7g089350 Brassica oleracea Bo7g089350 I 0.853
POPTR_0015s07930 Populus trichocarpa POPTR_0015s07930 I 0.853
Solyc05g006650.2 Solanum lycopersicum Solyc05g006650.2 I 0.853
Bo5g141620 Brassica oleracea Bo5g141620 I 0.853
Solyc06g072520.1 Solanum lycopersicum Solyc06g072520.1 I 0.853
Solyc09g057710.2 Solanum lycopersicum Solyc09g057710.2 I 0.853
AMTR_s00079p00137860 Amborella trichopoda AMTR_s00079p00137860 I 0.852
Aquca_100_00022 Aquilegia coerulea Aquca_100_00022 I 0.852
GSMUA_Achr9G00560_001 Musa acuminata GSMUA_Achr9G00560_001 I 0.852
GSMUA_Achr1G21010_001 Musa acuminata GSMUA_Achr1G21010_001 I 0.852
Carubv10017822m.g Capsella rubella Carubv10017822m.g I 0.850
Cagra.13768s0007 Capsella grandiflora Cagra.13768s0007 I 0.850
fgenesh1_pg.C_scaffold_5001270 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001270 I 0.850
TCM_019445 Theobroma cacao TCM_019445 I 0.849
Gorai.008G055400 Gossypium raimondii Gorai.008G055400 I 0.849
GLYMA17G34010 Glycine max GLYMA17G34010 N 0.848
fgenesh2_kg.8__2257__AT5G62610.1 Arabidopsis lyrata fgenesh2_kg.8__2257__AT5G62610.1 I 0.847
Carubv10026916m.g Capsella rubella Carubv10026916m.g I 0.847
Bo9g015060 Brassica oleracea Bo9g015060 I 0.847
Thhalv10004734m.g Eutrema salsugineum Thhalv10004734m.g I 0.847
Bostr.0568s0546 Boechera stricta Bostr.0568s0546 I 0.847
Cagra.4003s0049 Capsella grandiflora Cagra.4003s0049 I 0.847
BHLH79 Arabidopsis thaliana AT5G62610 I 0.847
Bra035888 Brassica rapa Bra035888 I 0.847
PRUPE_ppa010885mg Prunus persica PRUPE_ppa010885mg I 0.842
Bra010993 Brassica rapa Bra010993 I 0.842
Pm029081 Prunus mume Pm029081 I 0.842
MDP0000725991 Malus domestica MDP0000725991 I 0.842
orange1.1g042908m.g Citrus sinensis orange1.1g042908m.g I 0.842
Bostr.12659s0424 Boechera stricta Bostr.12659s0424 I 0.842
evm.TU.supercontig_65.44 Carica papaya evm.TU.supercontig_65.44 I 0.842
Bo3g138670 Brassica oleracea Bo3g138670 I 0.842
Lus10038939.g Linum usitatissimum Lus10038939.g N 0.840
cassava14677.m1 Manihot esculenta cassava14677.m1 I 0.839
GSMUA_Achr5G23700_001 Musa acuminata GSMUA_Achr5G23700_001 I 0.839
Solyc04g007300.2 Solanum lycopersicum Solyc04g007300.2 I 0.839
VIT_01s0011g03720 Vitis vinifera VIT_01s0011g03720 I 0.839
Thhalv10008699m.g Eutrema salsugineum Thhalv10008699m.g I 0.839
cassava46189.m1 Manihot esculenta cassava46189.m1 I 0.839