CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R000560
(
Geospiza fortis
)
C2H2 ZF,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
Gfo_R000560
T076241_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFHX3
M10088_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AFP1_Q6
0.916
0.916
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R000560
C2H2 ZF
614
637
LKCPKCNWHYKYQQTLEAHMKEKH
Gfo_R000560
C2H2 ZF
731
755
WRCEVCDYETNVARNLRIHMTSEKH
Gfo_R000560
C2H2 ZF
1015
1039
YHCVLCNYSTKAKLNLIQHVRSMKH
Gfo_R000560
C2H2 ZF
1159
1182
YQCPYCKYSNTDVNRLRVHAMTQH
Gfo_R000560
C2H2 ZF
1297
1322
FLCWKKGCSQVFKSSAALQTHFNDIH
Gfo_R000560
C2H2 ZF
1338
1360
YRCNQCSLAFKTIEKLQLHSQYH
Gfo_R000560
C2H2 ZF
1366
1389
TMCCLCQRSFRTFQALKKHLETSH
Gfo_R000560
C2H2 ZF
1482
1506
YKCTVCKESFTQKNILLVHYNSVSH
Gfo_R000560
C2H2 ZF
1533
1557
FKCNTCNVAYSQSSTLEIHMRSVLH
Gfo_R000560
Homeodomain
1950
2006
KRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ
Gfo_R000560
Homeodomain
2047
2103
RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK
Gfo_R000560
C2H2 ZF
2132
2153
YQCKKCSLVFQRIFDLIKHQKK
Gfo_R000560
C2H2 ZF
2333
2355
YQCDQCKLAFPSFEHWQEHQQLH
Gfo_R000560
Homeodomain
2445
2501
KRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK
Gfo_R000560
C2H2 ZF
2515
2537
RCPFCRALFKAKTALEAHIRSRH
Gfo_R000560
Homeodomain
2750
2806
KRFRTQMTNLQLKVLKSCFNDYRTPTMLECEVLGNDIGLPKRVVQVWFQNARAKEKK
Links
Other
C2H2 ZF,Homeodomain
family TFs
Other
Geospiza fortis
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy