CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
CJA18173
(
Caenorhabditis japonica
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CJA18173
T083790_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
mnm-2
M00616_2.00
Caenorhabditis elegans
RCNBWTCNNN
NNNGAWVNGY
PBM
Narasimhan et al.(2015)
pTH9080
0.827
0.986
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA18173a
C2H2 ZF
167
189
YRCDVCEKTFSRSNTLITHKRIH
CJA18173a
C2H2 ZF
195
217
FKCEHCGRAFRQPGNLTRHRLTH
CJA18173a
C2H2 ZF
223
245
YVCGLCDKAFNRASNLHTHMRTH
CJA18173b
C2H2 ZF
105
127
FKCEHCGRAFRQPGNLTRHRLTH
CJA18173b
C2H2 ZF
133
155
YVCGLCDKAFNRASNLHTHMRTH
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis japonica
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mnm-2
Caenorhabditis elegans
WBGene00003380
D
0.827
CBN21670
Caenorhabditis brenneri
CBN21670
I
0.827
CRE00068
Caenorhabditis remanei
CRE00068
I
0.827
CBG16689
Caenorhabditis briggsae
CBG16689
I
0.827
ACAC_0001268601
Angiostrongylus cantonensis
ACAC_0001268601
I
0.816
DICVIV_12463
Dictyocaulus viviparus
DICVIV_12463
I
0.816
ACOC_0000685901
Angiostrongylus costaricensis
ACOC_0000685901
I
0.816
ANCCEY_06081
Ancylostoma ceylanicum
ANCCEY_06081
I
0.816
HPBE_0001596301
Heligmosomoides bakeri
HPBE_0001596301
I
0.816
OESDEN_00257
Oesophagostomum dentatum
OESDEN_00257
N
0.811
SVUK_0001101901
Strongylus vulgaris
SVUK_0001101901
N
0.811
ANCDUO_22736
Ancylostoma duodenale
ANCDUO_22736
N
0.811
RSKR_0000680500
Rhabditophanes kr3021
RSKR_0000680500
I
0.804
NBR_0000581401
Nippostrongylus brasiliensis
NBR_0000581401
I
0.803
HCOI00972500
Haemonchus contortus
HCOI00972500
I
0.794
ASU_05270
Ascaris suum
ASU_05270
I
0.790
NECAME_09892
Necator americanus
NECAME_09892
N
0.787
DME_0000476501
Dracunculus medinensis
DME_0000476501
I
0.783
EVEC_0000906601
Enterobius vermicularis
EVEC_0000906601
I
0.780
TCNE_0000238001
Toxocara canis
TCNE_0000238001
N
0.777
nDi.2.2.2.g05062
Dirofilaria immitis
nDi.2.2.2.g05062
I
0.767
Bm2124
Brugia malayi
Bm2124
I
0.767
WBGene00238816
Onchocerca volvulus
WBGene00238816
I
0.767
LotgiG58234
Lottia gigantea
LotgiG58234
I
0.764
LOAG_05928
Loa loa
LOAG_05928
I
0.764
WUBG_15572
Wuchereria bancrofti
WUBG_15572
N
0.763
LotgiG69875
Lottia gigantea
LotgiG69875
I
0.760