PRDM16 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000001071 T097207_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825 0.996
PRDM16
M10224_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825 0.996
PRDM16
M10225_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825 0.996
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000000902 C2H2 ZF 219 240
ENSLAFP00000000902 C2H2 ZF 275 297
ENSLAFP00000000902 C2H2 ZF 303 325
ENSLAFP00000000902 C2H2 ZF 331 354
ENSLAFP00000000902 C2H2 ZF 360 382
ENSLAFP00000000902 C2H2 ZF 388 410
ENSLAFP00000000902 C2H2 ZF 417 438
ENSLAFP00000000902 C2H2 ZF 945 967
ENSLAFP00000000902 C2H2 ZF 973 996
ENSLAFP00000000902 C2H2 ZF 1002 1024
ENSLAFP00000017156 C2H2 ZF 85 106
ENSLAFP00000017156 C2H2 ZF 141 163
ENSLAFP00000017156 C2H2 ZF 169 191
ENSLAFP00000017156 C2H2 ZF 197 220
ENSLAFP00000017156 C2H2 ZF 226 248
ENSLAFP00000017156 C2H2 ZF 254 276
ENSLAFP00000017156 C2H2 ZF 283 304
ENSLAFP00000017156 C2H2 ZF 811 833
ENSLAFP00000017156 C2H2 ZF 839 862
ENSLAFP00000017156 C2H2 ZF 868 890

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRDM16 Homo sapiens ENSG00000142611 D 0.825
ENSAMXG00000014024 Astyanax mexicanus ENSAMXG00000014024 I 0.773
si:ch211-263k4.2 Oryzias latipes ENSORLG00000004492 I 0.774
ENSPFOG00000010341 Poecilia formosa ENSPFOG00000010341 I 0.774
ENSPPYG00000001968 Pongo abelii ENSPPYG00000001968 I 0.825
ENSPSIG00000004093 Pelodiscus sinensis ENSPSIG00000004093 I 0.825
PRDM16 Sus scrofa ENSSSCG00000021490 I 0.816
ENSXMAG00000019072 Xiphophorus maculatus ENSXMAG00000019072 I 0.774
Aan_R005955 Calypte anna Aan_R005955 I 0.801
Afo_R003306 Aptenodytes forsteri Afo_R003306 I 0.823
Alligator_sinensis_CCG011602.1 Alligator sinensis Alligator_sinensis_CCG011602.1 I 0.823
Brh_R007819 Buceros rhinoceros Brh_R007819 I 0.823
ENSP00000270722 Macaca fascicularis ENSP00000270722 I 0.825
ENSP00000417899-D2 Bos grunniens ENSP00000417899-D2 I 0.822
Gfo_R009744 Geospiza fortis Gfo_R009744 I 0.823
Ogr15306 Ophisaurus gracilis Ogr15306 I 0.802
ENSONIG00000002121 Oreochromis niloticus ENSONIG00000002121 I 0.769
PRDM16 Otolemur garnettii ENSOGAG00000005055 I 0.825
ENSAPLG00000005898 Anas platyrhynchos ENSAPLG00000005898 I 0.823
PRDM16 Bos taurus ENSBTAG00000018965 I 0.822
PRDM16 Canis familiaris ENSCAFG00000019473 I 0.817
PRDM16 Danio rerio ENSDARG00000078324 I 0.780
PRDM16 Equus caballus ENSECAG00000017045 I 0.824
ENSFALG00000009580 Ficedula albicollis ENSFALG00000009580 I 0.801
si:ch211-263k4.2 Gasterosteus aculeatus ENSGACG00000006600 I 0.774
ENSGALG00000001063 Gallus gallus ENSGALG00000001063 I 0.823
PRDM16 Gorilla gorilla ENSGGOG00000003763 I 0.825
ENSGMOG00000015664 Gadus morhua ENSGMOG00000015664 I 0.779
ENSLOCG00000005336 Lepisosteus oculatus ENSLOCG00000005336 I 0.811
PRDM16 Meleagris gallopavo ENSMGAG00000001857 I 0.823
PRDM16 Macaca mulatta ENSMMUG00000009350 I 0.825
XP_002938538 Xenopus tropicalis XP_002938538 I 0.826
si:ch211-263k4.2 Takifugu rubripes ENSTRUG00000014772 N 0.756
si:ch211-263k4.2 Tetraodon nigroviridis ENSTNIG00000011975 N 0.756