CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLOCG00000003619
(
Lepisosteus oculatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSLOCG00000003619
T097590_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.821
0.957
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.821
0.950
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.821
0.950
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.821
0.950
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.821
0.950
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.821
0.950
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.821
0.950
ZNF143
M10249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.821
0.950
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.766
0.832
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.766
0.832
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.766
0.832
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.766
0.832
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLOCP00000004298
C2H2 ZF
249
273
FRCDYEGCGKLYTTAHHLKVHERSH
ENSLOCP00000004298
C2H2 ZF
279
303
YQCDHLGCGKAFATGYGLKSHIRTH
ENSLOCP00000004298
C2H2 ZF
309
333
YRCQEMNCNKSFKTSGDLQKHIRTH
ENSLOCP00000004298
C2H2 ZF
339
363
FKCPFEGCGRSFTTSNIRKVHIRTH
ENSLOCP00000004298
C2H2 ZF
369
393
YYCSEPGCGRAFASATNYKNHMRIH
ENSLOCP00000004298
C2H2 ZF
399
423
YVCTVPGCDKRFTEYSSLYKHHVVH
ENSLOCP00000004298
C2H2 ZF
429
452
YNCNHCGKTYKQISTLAMHKRTAH
ENSLOCP00000004318
C2H2 ZF
276
300
FRCDYEGCGKLYTTAHHLKVHERSH
ENSLOCP00000004318
C2H2 ZF
306
330
YQCDHLGCGKAFATGYGLKSHIRTH
ENSLOCP00000004318
C2H2 ZF
336
360
YRCQEMNCNKSFKTSGDLQKHIRTH
ENSLOCP00000004318
C2H2 ZF
366
390
FKCPFEGCGRSFTTSNIRKVHIRTH
ENSLOCP00000004318
C2H2 ZF
396
420
YYCSEPGCGRAFASATNYKNHMRIH
ENSLOCP00000004318
C2H2 ZF
426
450
YVCTVPGCDKRFTEYSSLYKHHVVH
ENSLOCP00000004318
C2H2 ZF
456
479
YNCNHCGKTYKQISTLAMHKRTAH
Links
Other
C2H2 ZF
family TFs
Other
Lepisosteus oculatus
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy