CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ci
(
Drosophila melanogaster
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
FBgn0004859
T114419_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ci
M02644_2.00
Drosophila melanogaster
GACCACCCAMG
CKTGGGTGGTC
SELEX
Hallikas et al.(2006)
Ci
(Direct)
(Direct)
ci
M03672_2.00
Drosophila melanogaster
NCGMCCACMN
NKGTGGKCGN
SELEX
Nitta et al.(2015)
ci_1
(Direct)
(Direct)
ci
M06084_2.00
Drosophila melanogaster
RGMCCACMCAC
GTGKGTGGKCY
B1H
Zhu et al.(2011)
Ci_SANGER_5_FBgn0004859
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0088245
C2H2 ZF
451
476
TNCHWRSCRIEFITQDELVKHINNDH
FBpp0088245
C2H2 ZF
484
511
FVCRWEDCTRGEKPFKAQYMLVVHMRRH
FBpp0088245
C2H2 ZF
517
541
HKCTFEGCFKAYSRLENLKTHLRSH
FBpp0088245
C2H2 ZF
547
572
YTCEYPGCSKAFSNASDRAKHQNRTH
FBpp0088245
C2H2 ZF
578
603
YICKAPGCTKRYTDPSSLRKHVKTVH
FBpp0297298
C2H2 ZF
333
358
TNCHWRSCRIEFITQDELVKHINNDH
FBpp0297298
C2H2 ZF
366
393
FVCRWEDCTRGEKPFKAQYMLVVHMRRH
FBpp0297298
C2H2 ZF
399
423
HKCTFEGCFKAYSRLENLKTHLRSH
FBpp0297298
C2H2 ZF
429
454
YTCEYPGCSKAFSNASDRAKHQNRTH
FBpp0297298
C2H2 ZF
460
485
YICKAPGCTKRYTDPSSLRKHVKTVH
FBpp0300417
C2H2 ZF
451
476
TNCHWRSCRIEFITQDELVKHINNDH
FBpp0300417
C2H2 ZF
484
511
FVCRWEDCTRGEKPFKAQYMLVVHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Drosophila melanogaster
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy