CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GA26220
(
Drosophila pseudoobscura
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
FBgn0247595
T117174_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
rn
M03712_2.00
Drosophila melanogaster
BTTTTTWHV
BDWAAAAAV
SELEX
Nitta et al.(2015)
rn_1
0.827
1.000
rn
M06180_2.00
Drosophila melanogaster
GBNHTBDSNNBNTTTTTTTKSDHHB
VDDHSMAAAAAAANVNNSHVADNVC
B1H
Zhu et al.(2011)
rn_SANGER_10_FBgn0259172
0.827
1.000
rn
M06181_2.00
Drosophila melanogaster
NNNNBNNNNNNNDTTTTTTVNNNNB
VNNNNBAAAAAAHNNNNNNNVNNNN
B1H
Zhu et al.(2011)
rn_SOLEXA_5_FBgn0259172
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0281211
C2H2 ZF
495
517
YQCKMCPQIFSSKADLQLHTQIH
FBpp0281211
C2H2 ZF
524
546
YKCTQCSKAFANSSYLSQHTRIH
FBpp0281211
C2H2 ZF
552
574
YRCEICQRKFTQLSHLQQHIRTH
FBpp0281211
C2H2 ZF
580
604
YKCRHPGCQKAFSQLSNLQSHSRCH
FBpp0281211
C2H2 ZF
610
632
FKCNSCYKCFSDEPSLLEHIPKH
FBpp0281211
C2H2 ZF
641
663
HICQYCGKSYTQETYLTKHMQKH
FBpp0301655
C2H2 ZF
287
309
YKCTQCSKAFANSSYLSQHTRIH
FBpp0301655
C2H2 ZF
315
337
YRCEICQRKFTQLSHLQQHIRTH
FBpp0301655
C2H2 ZF
343
367
YKCRHPGCQKAFSQLSNLQSHSRCH
FBpp0301655
C2H2 ZF
373
395
FKCNSCYKCFSDEPSLLEHIPKH
FBpp0301655
C2H2 ZF
404
426
HICQYCGKSYTQETYLTKHMQKH
FBpp0301656
C2H2 ZF
503
525
YQCKMCPQIFSSKADLQLHTQIH
FBpp0301656
C2H2 ZF
532
554
YKCTQCSKAFANSSYLSQHTRIH
FBpp0301656
C2H2 ZF
560
582
YRCEICQRKFTQLSHLQQHIRTH
FBpp0301656
C2H2 ZF
588
612
YKCRHPGCQKAFSQLSNLQSHSRCH
FBpp0301656
C2H2 ZF
618
640
FKCNSCYKCFSDEPSLLEHIPKH
FBpp0301656
C2H2 ZF
649
671
HICQYCGKSYTQETYLTKHMQKH
Links
Other
C2H2 ZF
family TFs
Other
Drosophila pseudoobscura
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GD19488
Drosophila simulans
FBgn0190985
I
0.827
GJ10241
Drosophila virilis
FBgn0197528
N
0.827
GM10491
Drosophila sechellia
FBgn0165439
N
0.827
GH19280
Drosophila grimshawi
FBgn0126746
N
0.827
GF17309
Drosophila ananassae
FBgn0094327
N
0.827
GK11085
Drosophila willistoni
FBgn0213096
N
0.827
GE25797
Drosophila yakuba
FBgn0242852
I
0.827
CLEC008150
Cimex lectularius
CLEC008150
N
0.827
GG25249
Drosophila erecta
FBgn0117371
I
0.827
rn
Drosophila melanogaster
FBgn0267337
D
0.827
L798_13150
Zootermopsis nevadensis
L798_13150
N
0.825
RPRC000740
Rhodnius prolixus
RPRC000740
N
0.825
GI23490
Drosophila mojavensis
FBgn0146216
N
0.823
ACEP11966
Atta cephalotes
ACEP11966
N
0.819
NV18441
Nasonia vitripennis
NV18441
N
0.819
SINV21632
Solenopsis invicta
SINV21632
N
0.819
Cflo_10706--XP_392003.1_APIME
Camponotus floridanus
Cflo_10706--XP_392003.1_APIME
N
0.819
GB54118
Apis mellifera
GB54118
N
0.819
CPIJ020207
Culex quinquefasciatus
CPIJ020207
N
0.817
CpipJ_CPIJ020207
Culex pipiens
CpipJ_CPIJ020207
N
0.817
AFAF016561
Anopheles farauti
AFAF016561
N
0.817
ASIS002621
Anopheles sinensis
ASIS002621
N
0.817
LLOJ002296
Lutzomyia longipalpis
LLOJ002296
N
0.817
AMAM023802
Anopheles maculatus
AMAM023802
N
0.817
AFUN003758
Anopheles funestus
AFUN003758
N
0.817
YQE_06536
Dendroctonus ponderosae
YQE_06536
N
0.817
ACUA027622
Anopheles culicifacies
ACUA027622
N
0.817
AATE004258
Anopheles atroparvus
AATE004258
N
0.817
TC016018
Tribolium castaneum
TC016018
N
0.817
AAEL002763
Aedes aegypti
AAEL002763
N
0.817
AAEL015495
Aedes aegypti
AAEL015495
N
0.817
MDOA008356
Musca domestica
MDOA008356
N
0.792
AGAP002083
Anopheles gambiae
AGAP002083
I
0.782
AMEC016152
Anopheles melas
AMEC016152
N
0.773
AMEC018985
Anopheles melas
AMEC018985
N
0.773
AMEM001627
Anopheles merus
AMEM001627
N
0.773
AGAP002082
Anopheles gambiae
AGAP002082
N
0.771
AMEM000733
Anopheles merus
AMEM000733
N
0.771
AMEC019868
Anopheles melas
AMEC019868
N
0.771
AMAM007515
Anopheles maculatus
AMAM007515
N
0.771
AFUN003754
Anopheles funestus
AFUN003754
N
0.771
ACOM042270
Anopheles coluzzii
ACOM042270
N
0.771
AATE004381
Anopheles atroparvus
AATE004381
N
0.771
ACUA022483
Anopheles culicifacies
ACUA022483
N
0.771
ASIS011627
Anopheles sinensis
ASIS011627
N
0.771
AFAF002247
Anopheles farauti
AFAF002247
N
0.771
CPIJ013161
Culex quinquefasciatus
CPIJ013161
N
0.769
ACYPI006067
Acyrthosiphon pisum
ACYPI006067
N
0.769
SMAR014468
Strigamia maritima
SMAR014468
N
0.769
CpipJ_CPIJ013161
Culex pipiens
CpipJ_CPIJ013161
N
0.769
AAEL004799
Aedes aegypti
AAEL004799
N
0.769