Phyra84400 (Phytophthora ramorum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Phyra84400 T126290_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra84400
M01183_2.00		 Phytophthora ramorum
HRHCKYCGGM
KCCGRMGDYD		 PBM
Lambert et al.(2019)
pTH11169		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01183_2.00 C2H2 ZF 51 75
M01183_2.00 C2H2 ZF 81 103
M01183_2.00 C2H2 ZF 109 133
M01183_2.00 C2H2 ZF 139 163

DNA Binding Domains

Protein ID Domain From To Sequence
Phyra84400 C2H2 ZF 59 83
Phyra84400 C2H2 ZF 89 111
Phyra84400 C2H2 ZF 117 141
Phyra84400 C2H2 ZF 147 171

Links

Other C2H2 ZF family TFs
Other Phytophthora ramorum TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh_scip_prom.28083.941 Phytophthora lateralis fgenesh_scip_prom.28083.941 I 0.824
F443_04535 Phytophthora parasitica F443_04535 I 0.821
HpaG807312 Hyaloperonospora arabidopsidis HpaG807312 I 0.821
Physo138577 Phytophthora sojae Physo138577 I 0.812
PITG_10525 Phytophthora infestans PITG_10525 I 0.809
estExt_Genewise1Plus.C_130008 Phytophthora capsici estExt_Genewise1Plus.C_130008 I 0.797
maker-pir_contig_583-fgenesh-gene-0.5 Pythium irregulare maker-pir_contig_583-fgenesh-gene-0.5 I 0.771
maker-piw_contig_2368-snap-gene-0.2 Pythium iwayamai maker-piw_contig_2368-snap-gene-0.2 I 0.768
maker-pve_contig_99-fgenesh-gene-0.14 Pythium vexans maker-pve_contig_99-fgenesh-gene-0.14 I 0.767