CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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klf-3
(
Caenorhabditis elegans
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
WBGene00003480
T131563_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
klf-3
M00617_2.00
Caenorhabditis elegans
NHMCGCCCH
DGGGCGKDN
PBM
Narasimhan et al.(2015)
pTH9072
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CG42741
M06169_2.00
Drosophila melanogaster
RCCACRCCCWHY
RDWGGGYGTGGY
B1H
Zhu et al.(2011)
CG9895_SANGER_10_FBgn0034810
0.790
0.754
CG42741
M06170_2.00
Drosophila melanogaster
VRCCACRCCCH
DGGGYGTGGYB
B1H
Zhu et al.(2011)
CG9895_SOLEXA_5_FBgn0034810
0.790
0.754
KLF1
M00226_2.00
Homo sapiens
CMCGCCCM
KGGGCGKG
PBM
Barrera et al.(2016)
KLF1_REF
0.768
0.739
KLF1
M08293_2.00
Homo sapiens
NVNNNRCCMCRCCCH
DGGGYGKGGYNNNBN
ChIP-seq
Schmitges et al.(2016)
Q13351.MEME
0.768
0.739
KLF1
M08871_2.00
Homo sapiens
SVNDGCCMCRCCCH
DGGGYGKGGCHNBS
Misc
Kulakovskiy et al.(2013)
KLF1_HUMAN.H11MO.0.A
0.768
0.739
KLF1
M10163_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EKLF_Q5_01
0.768
0.739
KLF1
M10164_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EKLF_Q5
0.768
0.739
KLF1
M00224_2.00
Homo sapiens
YMCGCCCH
DGGGCGKR
PBM
Barrera et al.(2016)
KLF1_H299Y
0.768
0.725
Klf8
M00779_2.00
Mus musculus
NNNMCRCCYN
NRGGYGKNNN
PBM
Weirauch et al.(2013)
pTH3086
0.764
0.725
KLF8
M08867_2.00
Homo sapiens
CACMCMCKG
CMGKGKGTG
Misc
Kulakovskiy et al.(2013)
KLF8_HUMAN.H11MO.0.C
0.764
0.725
Klf8
M09000_2.00
Mus musculus
CACMCMCKG
CMGKGKGTG
Misc
Kulakovskiy et al.(2013)
KLF8_MOUSE.H11MO.0.C
0.764
0.725
KLF8
M10147_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$KLF8_Q5_01
0.764
0.725
KLF8
M10148_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$KLF8_Q5
0.764
0.725
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00617_2.00
C2H2 ZF
51
75
HACTYPGCFKKYSKSSHLKAHERTH
M00617_2.00
C2H2 ZF
81
105
FVCKWQNCSWKFARSDELTRHMRKH
M00617_2.00
C2H2 ZF
111
133
FRCSLCDRNFARSDHLSLHMKRH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F54H5.4a
C2H2 ZF
224
248
HACTYPGCFKKYSKSSHLKAHERTH
F54H5.4a
C2H2 ZF
254
278
FVCKWQNCSWKFARSDELTRHMRKH
F54H5.4a
C2H2 ZF
284
306
FRCSLCDRNFARSDHLSLHMKRH
F54H5.4b
C2H2 ZF
230
254
HACTYPGCFKKYSKSSHLKAHERTH
F54H5.4b
C2H2 ZF
260
284
FVCKWQNCSWKFARSDELTRHMRKH
F54H5.4b
C2H2 ZF
290
312
FRCSLCDRNFARSDHLSLHMKRH
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis elegans
TFs
210 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CJA34076
Caenorhabditis japonica
CJA34076
I
0.827
CBN12606
Caenorhabditis brenneri
CBN12606
I
0.823
CBN19589
Caenorhabditis brenneri
CBN19589
I
0.823
CRE26517
Caenorhabditis remanei
CRE26517
I
0.823
CBG04311
Caenorhabditis briggsae
CBG04311
I
0.823
GG20076
Drosophila erecta
FBgn0112270
I
0.790
GH20915
Drosophila grimshawi
FBgn0128377
I
0.790
GF11307
Drosophila ananassae
FBgn0088347
I
0.790
GA22108
Drosophila pseudoobscura
FBgn0064422
I
0.790
MDOA005423
Musca domestica
MDOA005423
I
0.790
LCUP006184
Lucilia cuprina
LCUP006184
I
0.790
CG42741
Drosophila melanogaster
FBgn0261705
D
0.790
GD25089
Drosophila simulans
FBgn0196401
I
0.790
GJ20749
Drosophila virilis
FBgn0207886
I
0.790
GE11614
Drosophila yakuba
FBgn0229413
I
0.790
GM15591
Drosophila sechellia
FBgn0170509
I
0.790
GL10855
Drosophila persimilis
FBgn0148465
I
0.790
GK19604
Drosophila willistoni
FBgn0221602
I
0.790
GI18350
Drosophila mojavensis
FBgn0141089
I
0.790
ANCCEY_05272
Ancylostoma ceylanicum
ANCCEY_05272
I
0.784
HCOI00075700
Haemonchus contortus
HCOI00075700
I
0.784
HCOI00079800
Haemonchus contortus
HCOI00079800
I
0.784
NECAME_03970
Necator americanus
NECAME_03970
I
0.784
HPLM_0000358501
Haemonchus placei
HPLM_0000358501
I
0.784
DICVIV_04886
Dictyocaulus viviparus
DICVIV_04886
I
0.784
AATE020384
Anopheles atroparvus
AATE020384
I
0.781
ACHR001612
Anopheles christyi
ACHR001612
I
0.781
ACUA022835
Anopheles culicifacies
ACUA022835
I
0.781
AARA000098
Anopheles arabiensis
AARA000098
I
0.781
AGAP010520
Anopheles gambiae
AGAP010520
I
0.781
CpipJ_CPIJ004724
Culex pipiens
CpipJ_CPIJ004724
I
0.781
ADIR011723
Anopheles dirus
ADIR011723
I
0.781
ADAC003701
Anopheles darlingi
ADAC003701
I
0.781
AALB010205
Anopheles albimanus
AALB010205
I
0.781
ACOM041708
Anopheles coluzzii
ACOM041708
I
0.781
AFAF003290
Anopheles farauti
AFAF003290
I
0.781
CPIJ004724
Culex quinquefasciatus
CPIJ004724
I
0.781
ENSACAG00000008367
Anolis carolinensis
ENSACAG00000008367
I
0.781
DAPPUDRAFT_27999
Daphnia pulex
DAPPUDRAFT_27999
I
0.781
AAEL004806
Aedes aegypti
AAEL004806
I
0.781
ASTEI07110
Anopheles stephensi
ASTEI07110
I
0.781
AMIN001268
Anopheles minimus
AMIN001268
I
0.781
AMEM014876
Anopheles merus
AMEM014876
I
0.781
AFUN011554
Anopheles funestus
AFUN011554
I
0.781
AQUA001297
Anopheles quadriannulatus
AQUA001297
I
0.781
KLF1
Oryctolagus cuniculus
ENSOCUG00000011998
I
0.780
CapteG137485
Capitella teleta
CapteG137485
I
0.777
CGI_10021556
Crassostrea gigas
CGI_10021556
I
0.777
ENSMODG00000010888
Monodelphis domestica
ENSMODG00000010888
I
0.777
ENSPMAG00000002754
Petromyzon marinus
ENSPMAG00000002754
I
0.777
Ocbimv22021426m.g
Octopus bimaculoides
Ocbimv22021426m.g
I
0.777
LotgiG122963
Lottia gigantea
LotgiG122963
I
0.777
HelroG126271
Helobdella robusta
HelroG126271
I
0.777
KLF1
Sus scrofa
ENSSSCG00000013730
I
0.771
ANCCAN_01941
Ancylostoma caninum
ANCCAN_01941
I
0.771
KLF1
Otolemur garnettii
ENSOGAG00000025438
I
0.771
ENSBTAP00000043340-D1
Bos grunniens
ENSBTAP00000043340-D1
I
0.771
SBAD_0000267001
Soboliphyme baturini
SBAD_0000267001
I
0.771
ENSMPUG00000004544
Mustela putorius furo
ENSMPUG00000004544
I
0.771
KLF1
Myotis lucifugus
ENSMLUG00000012751
I
0.771
KLF1
Canis familiaris
ENSCAFG00000017111
I
0.771
KLF1
Felis catus
ENSFCAG00000026066
I
0.771
KLF1
Bos taurus
ENSBTAG00000006083
I
0.771
ENSAMEG00000012407
Ailuropoda melanoleuca
ENSAMEG00000012407
I
0.771
TCLT_0000664101
Thelazia callipaeda
TCLT_0000664101
I
0.770
MCOS_0000326501
Mesocestoides corti
MCOS_0000326501
I
0.770
SMAR000131
Strigamia maritima
SMAR000131
I
0.768
SMAR007231
Strigamia maritima
SMAR007231
I
0.768
ASIM_0001887501
Anisakis simplex
ASIM_0001887501
I
0.768
PHUM207190
Pediculus humanus
PHUM207190
I
0.768
LotgiG79321
Lottia gigantea
LotgiG79321
I
0.768
tetur17g00210
Tetranychus urticae
tetur17g00210
I
0.768
KLF1
Macaca mulatta
ENSMMUG00000011230
I
0.768
KLF1
Microcebus murinus
ENSMICG00000016260
I
0.768
Ocbimv22019777m.g
Octopus bimaculoides
Ocbimv22019777m.g
I
0.768
KLF1
Homo sapiens
ENSG00000105610
D
0.768
ENSCSAG00000006545
Chlorocebus sabaeus
ENSCSAG00000006545
I
0.768
KLF1
Cavia porcellus
ENSCPOG00000000784
I
0.768
KLF1
Callithrix jacchus
ENSCJAG00000004762
I
0.768
KLF1
Gorilla gorilla
ENSGGOG00000003408
I
0.768
SNAPOd2T00013472001
Oikopleura dioica
SNAPOd2T00013472001
I
0.768
ENSMMUP00000014716
Macaca fascicularis
ENSMMUP00000014716
I
0.768
ENSNLEG00000012868
Nomascus leucogenys
ENSNLEG00000012868
I
0.768
Sakowv30017457m.g
Saccoglossus kowalevskii
Sakowv30017457m.g
I
0.768
ASIM_0000327401
Anisakis simplex
ASIM_0000327401
I
0.768
KLF1
Loxodonta africana
ENSLAFG00000016145
I
0.768
Ppa-klf-1
Pristionchus pacificus
PPA04120
I
0.768
KLF1
Pan troglodytes
ENSPTRG00000010547
I
0.768
scaffold1313-EXSNAP2012.6
Pristionchus exspectatus
scaffold1313-EXSNAP2012.6
I
0.768
CGI_10024574
Crassostrea gigas
CGI_10024574
I
0.768
KLF1
Procavia capensis
ENSPCAG00000015589
I
0.768
ENSTRUG00000007828
Takifugu rubripes
ENSTRUG00000007828
I
0.768
KLF1
Tupaia belangeri
ENSTBEG00000013433
I
0.768
ENSPPYG00000009612
Pongo abelii
ENSPPYG00000009612
I
0.768
KLF1
Ochotona princeps
ENSOPRG00000004951
I
0.768
TCLT_0000033501
Thelazia callipaeda
TCLT_0000033501
I
0.767
EmuJ_000608700
Echinococcus multilocularis
EmuJ_000608700
I
0.767
TASK_0000897201
Taenia asiatica
TASK_0000897201
I
0.767
TTAC_0000614201
Hydatigera taeniaeformis
TTAC_0000614201
I
0.767
ECANG7_07352
Echinococcus canadensis
ECANG7_07352
I
0.767
nDi.2.2.2.g06335
Dirofilaria immitis
nDi.2.2.2.g06335
I
0.767
DILT_0000895101
Diphyllobothrium latum
DILT_0000895101
I
0.767
tetur01g01330
Tetranychus urticae
tetur01g01330
I
0.765
SPU_020311
Strongylocentrotus purpuratus
SPU_020311
I
0.765
HHAL010738-PA
Halyomorpha halys
HHAL010738-PA
I
0.765
YQE_08410
Dendroctonus ponderosae
YQE_08410
I
0.765
CapteG88086
Capitella teleta
CapteG88086
I
0.765
ACYPI34996
Acyrthosiphon pisum
ACYPI34996
I
0.765
L892_g18702
Steinernema scapterisci
L892_g18702
I
0.765
NV17335
Nasonia vitripennis
NV17335
I
0.765
D918_01816
Trichuris suis
D918_01816
I
0.765
TTRE_0000268201
Trichuris trichiura
TTRE_0000268201
I
0.765
L798_10335
Zootermopsis nevadensis
L798_10335
I
0.765
ISCW016130
Ixodes scapularis
ISCW016130
I
0.765
GB52090
Apis mellifera
GB52090
I
0.765
L889_g30961
Steinernema feltiae
L889_g30961
I
0.765
LDEC001973
Leptinotarsa decemlineata
LDEC001973
I
0.765
PHUM236000
Pediculus humanus
PHUM236000
I
0.765
PHUM206780
Pediculus humanus
PHUM206780
I
0.765
BGLB007176
Biomphalaria glabrata
BGLB007176
I
0.765
ENSPPYG00000020400
Pongo abelii
ENSPPYG00000020400
I
0.764
ENSCSAVG00000009966
Ciona savignyi
ENSCSAVG00000009966
I
0.764
KLF8
Pan troglodytes
ENSPTRG00000021957
I
0.764
KLF8
Homo sapiens
ENSG00000102349
D
0.764
KLF8
Equus caballus
ENSECAG00000016062
I
0.764
ENSPFOG00000000812
Poecilia formosa
ENSPFOG00000000812
I
0.764
zf(c2h2)-23
Ciona intestinalis
ENSCING00000014976
I
0.764
klf2
Ciona intestinalis
ENSCING00000014590
I
0.764
ALUE_0001029501
Ascaris lumbricoides
ALUE_0001029501
I
0.764
klf8
Oryzias latipes
ENSORLG00000015374
I
0.764
KLF8
Pteropus vampyrus
ENSPVAG00000000264
I
0.764
KLF8
Callithrix jacchus
ENSCJAG00000007304
I
0.764
ENSCSAG00000012078
Chlorocebus sabaeus
ENSCSAG00000012078
I
0.764
KLF8
Cavia porcellus
ENSCPOG00000010165
I
0.764
KLF8
Oryctolagus cuniculus
ENSOCUG00000005068
I
0.764
ENSCSAVG00000002903
Ciona savignyi
ENSCSAVG00000002903
I
0.764
ENSP00000417303-D1
Bos grunniens
ENSP00000417303-D1
I
0.764
CJA11853
Caenorhabditis japonica
CJA11853
I
0.764
NEMVEDRAFT_v1g147359
Nematostella vectensis
NEMVEDRAFT_v1g147359
I
0.764
NEMVEDRAFT_v1g83807
Nematostella vectensis
NEMVEDRAFT_v1g83807
I
0.764
KLF8
Tursiops truncatus
ENSTTRG00000008773
I
0.764
DAPPUDRAFT_48391
Daphnia pulex
DAPPUDRAFT_48391
I
0.764
ML25776a
Mnemiopsis leidyi
ML25776a
I
0.764
ENSNLEG00000016353
Nomascus leucogenys
ENSNLEG00000016353
I
0.764
Klf8
Mus musculus
ENSMUSG00000041649
D
0.764
ASU_13892
Ascaris suum
ASU_13892
I
0.764
KLF8
Myotis lucifugus
ENSMLUG00000016695
I
0.764
CGI_10010790
Crassostrea gigas
CGI_10010790
I
0.764
Klf8
Rattus norvegicus
ENSRNOG00000039057
I
0.764
ENSTSYG00000011477
Tarsius syrichta
ENSTSYG00000011477
I
0.764
Myotis_brandtii_KLF8_10010984
Myotis brandtii
Myotis_brandtii_KLF8_10010984
I
0.764
ENSSTOG00000012012
Ictidomys tridecemlineatus
ENSSTOG00000012012
I
0.764
KLF8
Gorilla gorilla
ENSGGOG00000008188
I
0.764
ENSOARG00000005543
Ovis aries
ENSOARG00000005543
I
0.764
ENSONIG00000013257
Oreochromis niloticus
ENSONIG00000013257
I
0.764
ENSMMUP00000019255
Macaca fascicularis
ENSMMUP00000019255
I
0.764
klf8
Takifugu rubripes
ENSTRUG00000009714
I
0.764
klf-1
Caenorhabditis elegans
WBGene00018990
I
0.764
klf8
Tetraodon nigroviridis
ENSTNIG00000004690
I
0.764
CLEC010043
Cimex lectularius
CLEC010043
I
0.764
EVEC_0000950401
Enterobius vermicularis
EVEC_0000950401
I
0.763
SMUV_0000108101
Syphacia muris
SMUV_0000108101
I
0.763
L898_g19820
Steinernema monticolum
L898_g19820
I
0.762
L893_g29274
Steinernema glaseri
L893_g29274
I
0.762
BXY_0235800
Bursaphelenchus xylophilus
BXY_0235800
I
0.761
HPBE_0001838801
Heligmosomoides bakeri
HPBE_0001838801
I
0.761
EVEC_0001049001
Enterobius vermicularis
EVEC_0001049001
I
0.761
DICVIV_12136
Dictyocaulus viviparus
DICVIV_12136
I
0.761
NEMVEDRAFT_v1g229565
Nematostella vectensis
NEMVEDRAFT_v1g229565
I
0.761
ACOC_0001313301
Angiostrongylus costaricensis
ACOC_0001313301
I
0.761
ENSLACG00000004425
Latimeria chalumnae
ENSLACG00000004425
I
0.761
SPU_017470
Strongylocentrotus purpuratus
SPU_017470
I
0.761
BGLB001194
Biomphalaria glabrata
BGLB001194
I
0.761
TC006126
Tribolium castaneum
TC006126
I
0.761
ANCDUO_09307
Ancylostoma duodenale
ANCDUO_09307
I
0.761
SMU15021707
Schmidtea mediterranea
SMU15021707
I
0.761
ANCDUO_04077
Ancylostoma duodenale
ANCDUO_04077
I
0.761
ACAC_0001026501
Angiostrongylus cantonensis
ACAC_0001026501
I
0.761
SVUK_0000441401
Strongylus vulgaris
SVUK_0000441401
I
0.760
HPLM_0001005201
Haemonchus placei
HPLM_0001005201
I
0.760
KGM_08807
Danaus plexippus
KGM_08807
I
0.760
OESDEN_17037
Oesophagostomum dentatum
OESDEN_17037
I
0.760
NECAME_14309
Necator americanus
NECAME_14309
I
0.760
HMEL003963
Heliconius melpomene
HMEL003963
I
0.760
CRE14941
Caenorhabditis remanei
CRE14941
I
0.760
HCOI00991800
Haemonchus contortus
HCOI00991800
I
0.760
BGIBMGA002047
Bombyx mori
BGIBMGA002047
I
0.760
ANCCAN_11801
Ancylostoma caninum
ANCCAN_11801
I
0.760
ANCCEY_14830
Ancylostoma ceylanicum
ANCCEY_14830
I
0.760
CBN11985
Caenorhabditis brenneri
CBN11985
I
0.760
TELCIR_10559
Teladorsagia circumcincta
TELCIR_10559
I
0.760
OESDEN_16972
Oesophagostomum dentatum
OESDEN_16972
I
0.760
HCOI00361200
Haemonchus contortus
HCOI00361200
I
0.760
CBG22482
Caenorhabditis briggsae
CBG22482
I
0.760
HelroG128168
Helobdella robusta
HelroG128168
I
0.759
D918_06264
Trichuris suis
D918_06264
I
0.759
KLF1
Tursiops truncatus
ENSTTRG00000003596
I
0.758
tetur04g03720
Tetranychus urticae
tetur04g03720
I
0.758
LLOJ006638
Lutzomyia longipalpis
LLOJ006638
I
0.757
ACAC_0001381401
Angiostrongylus cantonensis
ACAC_0001381401
I
0.757
ACOC_0001094901
Angiostrongylus costaricensis
ACOC_0001094901
I
0.757
ACYPI000624
Acyrthosiphon pisum
ACYPI000624
I
0.757
SNAPOd2T00000985001
Oikopleura dioica
SNAPOd2T00000985001
I
0.757
HPLM_0000852701
Haemonchus placei
HPLM_0000852701
I
0.757
NBR_0001426101
Nippostrongylus brasiliensis
NBR_0001426101
I
0.757
LotgiG111402
Lottia gigantea
LotgiG111402
I
0.757
ASU_08391
Ascaris suum
ASU_08391
I
0.757
Pvit_14591
Pogona vitticeps
Pvit_14591
I
0.757
nRc.2.0.1.g22861
Romanomermis culicivorax
nRc.2.0.1.g22861
I
0.756