CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Alligator_sinensis_CCG001391.4
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG001391.4
T132974_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Maz
M08988_2.00
Mus musculus
YYBYYYYYYCNSYYCCWCCYYN
NRRGGWGGRRSNGRRRRRRVRR
Misc
Kulakovskiy et al.(2013)
MAZ_MOUSE.H11MO.0.A
0.782
0.964
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG001391.4
C2H2 ZF
1
19
MCGKAFRDVYHLNRHKLSH
Alligator_sinensis_CCG001391.4
C2H2 ZF
25
47
YQCPVCQQRFKRKDRMSYHVRSH
Alligator_sinensis_CCG001391.4
C2H2 ZF
55
78
YICSHCGKSFSRPDHLNSHVRQVH
Alligator_sinensis_CCG001391.4
C2H2 ZF
84
106
FKCETCEAAFATKDRLRAHTVRH
Alligator_sinensis_CCG001391.4
C2H2 ZF
110
131
VPCHVCGKMLSAAYITDHMKVH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy