CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.8.393.1
(
Phytophthora capsici
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
gw1.8.393.1
T146313_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra42912
M01181_2.00
Phytophthora ramorum
RCSCATCHYN
NRDGATGSGY
PBM
Lambert et al.(2019)
pTH11167
0.807
0.942
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.8.393.1
C2H2 ZF
4
28
YVCTEVHCGKQFPRSFALRRHMRIH
gw1.8.393.1
C2H2 ZF
34
58
YACDYEGCTQRFNTSGNLSRHKRIH
gw1.8.393.1
C2H2 ZF
64
88
YPCIFDSCGKRFNTSTKLKRHMRIH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora capsici
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy