XP_002489513.1 (Pichia pastoris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002489513.1 T146734_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MET32
M00022_2.00 		Saccharomyces cerevisiae
NVMGCCACAV
BTGTGGCKBN		 PBM
Badis et al.(2008)
MET32_2153 		0.758 0.750
MET32
M01528_2.00 		Saccharomyces cerevisiae
MGCCACAN
NTGTGGCK		 PBM
Zhu et al.(2009)
Met32 		0.758 0.750
MET32
M07452_2.00 		Saccharomyces cerevisiae
MGCCACM
KGTGGCK		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0334.1 		0.758 0.750
MET32
M08518_2.00 		Saccharomyces cerevisiae
VHKCCACA
TGTGGMDB		 Misc
DeBoer et al.(2011)
YDR253C_1375 		0.758 0.750
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002489513.1 C2H2 ZF 217 239
XP_002489513.1 C2H2 ZF 246 266

Links

Other C2H2 ZF family TFs
Other Pichia pastoris TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PAS_chr1-3_0170 Komagataella pastoris PAS_chr1-3_0170 I 0.827
HPODL_01443 Ogataea parapolymorpha HPODL_01443 I 0.780
CLUG_05144 Clavispora lusitaniae CLUG_05144 N 0.771
CLUG_05144 Candida lusitaniae CLUG_05144 N 0.771
GNLVRS01_PISO0L08305g Millerozyma farinosa GNLVRS01_PISO0L08305g N 0.766
LELG_02390 Lodderomyces elongisporus LELG_02390 N 0.766
SPAPADRAFT_149927 Spathaspora passalidarum SPAPADRAFT_149927 N 0.766
PICST_67657 Scheffersomyces stipitis PICST_67657 N 0.766
G210_5850 Candida maltosa G210_5850 N 0.766
estExt_fgenesh1_pg.C_chr_4.10541 Pichia stipitis estExt_fgenesh1_pg.C_chr_4.10541 N 0.766
GNLVRS01_PISO0K08304g Millerozyma farinosa GNLVRS01_PISO0K08304g N 0.766
CaO19.1757 Candida albicans CaO19.1757 N 0.766
CPAG_01593 Candida parapsilosis CPAG_01593 N 0.766
AWRI1499_2615 Brettanomyces bruxellensis AWRI1499_2615 N 0.766
CaO19.9326 Candida albicans CaO19.9326 N 0.766
CD36_24290 Candida dubliniensis CD36_24290 N 0.766
CTRG_02010 Candida tropicalis CTRG_02010 N 0.766
CORT_0C06530 Candida orthopsilosis CORT_0C06530 N 0.766
DEHA2F09394g Debaryomyces hansenii DEHA2F09394g N 0.762
PGUG_01520 Candida guilliermondii PGUG_01520 N 0.760
PGUG_01520 Meyerozyma guilliermondii PGUG_01520 N 0.760
3987_YDR253C Saccharomyces mikatae 3987_YDR253C I 0.758
4678_YDR253C Saccharomyces paradoxus 4678_YDR253C I 0.758
Scas_Contig568.5 Saccharomyces castellii Scas_Contig568.5 I 0.758
NCAS_0C02430 Naumovozyma castellii NCAS_0C02430 I 0.758
SKUD_191509 Saccharomyces kudriavzevii SKUD_191509 I 0.758
MET32 Saccharomyces cerevisiae YDR253C D 0.758
CANTEDRAFT_115633 Candida tenuis CANTEDRAFT_115633 N 0.756