L893_g23908 (Steinernema glaseri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L893_g23908 T154666_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
blmp-1
M08103_2.00 		Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR		 ChIP-seq
Mathelier et al.(2014)
MA0537.1 		0.770 0.825
blmp-1
M08195_2.00 		Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB		 ChIP-seq
Contrino et al.(2012)
Mw137 		0.770 0.825
Blimp-1
M03692_2.00 		Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN		 SELEX
Nitta et al.(2015)
Blimp-1_1 		0.759 0.816
Blimp-1
M06141_2.00 		Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT		 B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625 		0.759 0.816
Blimp-1
M06142_2.00 		Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY		 B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625 		0.759 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g23908.t1 C2H2 ZF 24 46
L893_g23908.t1 C2H2 ZF 52 74
L893_g23908.t1 C2H2 ZF 80 102
L893_g23908.t1 C2H2 ZF 108 130
L893_g23908.t1 C2H2 ZF 136 157

Links

Other C2H2 ZF family TFs
Other Steinernema glaseri TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L892_g2443 Steinernema scapterisci L892_g2443 I 0.827
L889_g7623 Steinernema feltiae L889_g7623 I 0.827
L898_g18820 Steinernema monticolum L898_g18820 I 0.827
L596_g21750 Steinernema carpocapsae L596_g21750 I 0.827
ASU_05469 Ascaris suum ASU_05469 I 0.779
TCNE_0001220201 Toxocara canis TCNE_0001220201 I 0.779
SMUV_0001104401 Syphacia muris SMUV_0001104401 I 0.771
EVEC_0000549701 Enterobius vermicularis EVEC_0000549701 I 0.771
CBN18993 Caenorhabditis brenneri CBN18993 I 0.770
CRE29848 Caenorhabditis remanei CRE29848 I 0.770
CBG02201 Caenorhabditis briggsae CBG02201 I 0.770
blmp-1 Caenorhabditis elegans WBGene00003847 D 0.770
TCLT_0000472801 Thelazia callipaeda TCLT_0000472801 I 0.769
DME_0000608401 Dracunculus medinensis DME_0000608401 I 0.767
Hba_09212 Heterorhabditis bacteriophora Hba_09212 I 0.765
WBGene00238199 Onchocerca volvulus WBGene00238199 I 0.765
LOAG_11444 Loa loa LOAG_11444 I 0.765
ANCCEY_05862 Ancylostoma ceylanicum ANCCEY_05862 I 0.765
ANCDUO_02710 Ancylostoma duodenale ANCDUO_02710 I 0.765
ANCCAN_13506 Ancylostoma caninum ANCCAN_13506 I 0.765
BTMF_0000836601 Brugia timori BTMF_0000836601 I 0.765
HCOI00760100 Haemonchus contortus HCOI00760100 I 0.765
nLs.2.1.2.g09168 Litomosoides sigmodontis nLs.2.1.2.g09168 I 0.765
nOo.2.0.1.g07043 Onchocerca ochengi nOo.2.0.1.g07043 I 0.765
Bm3574 Brugia malayi Bm3574 I 0.765
HPLM_0001789201 Haemonchus placei HPLM_0001789201 I 0.765
nDi.2.2.2.g10740 Dirofilaria immitis nDi.2.2.2.g10740 I 0.765
NBR_0002088601 Nippostrongylus brasiliensis NBR_0002088601 I 0.765
WUBG_04696 Wuchereria bancrofti WUBG_04696 I 0.765
TELCIR_19105 Teladorsagia circumcincta TELCIR_19105 I 0.765
SVE_1713000 Strongyloides venezuelensis SVE_1713000 I 0.761
SSTP_0000757300 Strongyloides stercoralis SSTP_0000757300 I 0.761
SPAL_0000884500 Strongyloides papillosus SPAL_0000884500 I 0.761
AMEC005588 Anopheles melas AMEC005588 I 0.759
AFUN002606 Anopheles funestus AFUN002606 I 0.759
AFAF006673 Anopheles farauti AFAF006673 I 0.759
AMEM000073 Anopheles merus AMEM000073 I 0.759
ASIS005657 Anopheles sinensis ASIS005657 I 0.759
ACUA020082 Anopheles culicifacies ACUA020082 I 0.759
MDOA000384 Musca domestica MDOA000384 I 0.759
PPAI008567 Phlebotomus papatasi PPAI008567 I 0.759
HHAL002221-PA Halyomorpha halys HHAL002221-PA I 0.759
GH16462 Drosophila grimshawi FBgn0123933 I 0.759
GG15278 Drosophila erecta FBgn0107530 I 0.759
GF23985 Drosophila ananassae FBgn0100979 I 0.759
GM14713 Drosophila sechellia FBgn0169634 I 0.759
GJ13412 Drosophila virilis FBgn0200637 I 0.759
GE21501 Drosophila yakuba FBgn0238758 I 0.759
GK17303 Drosophila willistoni FBgn0219302 I 0.759
Blimp-1 Drosophila melanogaster FBgn0035625 D 0.759
DAPPUDRAFT_319330 Daphnia pulex DAPPUDRAFT_319330 I 0.759
ACEP26221 Atta cephalotes ACEP26221 I 0.759
AAEL013770 Aedes aegypti AAEL013770 I 0.759
AAEL004255 Aedes aegypti AAEL004255 I 0.759
ADAC005262 Anopheles darlingi ADAC005262 I 0.759
AGAP006592 Anopheles gambiae AGAP006592 I 0.759
CPIJ007425 Culex quinquefasciatus CPIJ007425 I 0.759
BGIBMGA000319 Bombyx mori BGIBMGA000319 I 0.759
GA23469 Drosophila pseudoobscura FBgn0244871 I 0.759
GB51060 Apis mellifera GB51060 I 0.759
Cflo_04377--XP_391847.3_APIME Camponotus floridanus Cflo_04377--XP_391847.3_APIME I 0.759
SMAR011793 Strigamia maritima SMAR011793 I 0.759
SINV14078 Solenopsis invicta SINV14078 I 0.759
CLEC009125 Cimex lectularius CLEC009125 I 0.759
CpipJ_CPIJ007425 Culex pipiens CpipJ_CPIJ007425 I 0.759
AATE010559 Anopheles atroparvus AATE010559 I 0.759
LCUP008191 Lucilia cuprina LCUP008191 I 0.759
RPRC001983 Rhodnius prolixus RPRC001983 I 0.759
NV12817 Nasonia vitripennis NV12817 I 0.759
HMEL007072 Heliconius melpomene HMEL007072 I 0.759
ACOM039487 Anopheles coluzzii ACOM039487 I 0.759
L798_14234 Zootermopsis nevadensis L798_14234 I 0.759
MCINX009345 Melitaea cinxia MCINX009345 I 0.759
KGM_16647 Danaus plexippus KGM_16647 I 0.759
BXY_0993100 Bursaphelenchus xylophilus BXY_0993100 I 0.758
D917_07972 Trichinella nativa D917_07972 I 0.758