Carubv10001713m.g (Capsella rubella)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 Carubv10001713m.g T160643_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001713m CBF/NF-Y 134 186

Links

Other CBF/NF-Y family TFs
Other Capsella rubella TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N 1.000
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N 0.962
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N 0.962
NFYA10 Arabidopsis thaliana AT5G06510 N 0.962
Thhalv10021244m.g Eutrema salsugineum Thhalv10021244m.g N 0.925
Thhalv10014346m.g Eutrema salsugineum Thhalv10014346m.g N 0.906
UNE8 Arabidopsis lyrata fgenesh2_kg.3__563__AT3G05690.1 N 0.906
Bo5g145140 Brassica oleracea Bo5g145140 N 0.906
UNE8 Arabidopsis thaliana AT3G05690 N 0.906
Bostr.2570s0105 Boechera stricta Bostr.2570s0105 N 0.906
Lus10013592.g Linum usitatissimum Lus10013592.g N 0.868
Lus10021259.g Linum usitatissimum Lus10021259.g N 0.868
Bo3g060160 Brassica oleracea Bo3g060160 N 0.868
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N 0.868
Carubv10014086m.g Capsella rubella Carubv10014086m.g N 0.857
Cagra.2108s0005 Capsella grandiflora Cagra.2108s0005 N 0.857
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N 0.849
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N 0.849
Bo9g176100 Brassica oleracea Bo9g176100 N 0.849
Ca_00866 Cicer arietinum Ca_00866 N 0.849
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N 0.849
Bra009200 Brassica rapa Bra009200 N 0.830
GLYMA03G36140 Glycine max GLYMA03G36140 N 0.830
Cla017884 Citrullus lanatus Cla017884 N 0.821
Bra040529 Brassica rapa Bra040529 N 0.821
Bo1g150420 Brassica oleracea Bo1g150420 N 0.821
Cucsa.241980 Cucumis sativus Cucsa.241980 N 0.821
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N 0.811
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N 0.811
TCM_022984 Theobroma cacao TCM_022984 N 0.811
GLYMA19G38800 Glycine max GLYMA19G38800 N 0.804
Bra001164 Brassica rapa Bra001164 N 0.804
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N 0.792
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N 0.792
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N 0.792
POPTR_0006s21640 Populus trichocarpa POPTR_0006s21640 N 0.786
Gorai.007G363800 Gossypium raimondii Gorai.007G363800 N 0.786
PK26326.1 Cannabis sativa PK26326.1 N 0.786
chr5.CM0571.20.nd Lotus japonicus chr5.CM0571.20.nd N 0.786
Cucsa.127910 Cucumis sativus Cucsa.127910 I 0.774
PK21261.1 Cannabis sativa PK21261.1 I 0.774
Cla017115 Citrullus lanatus Cla017115 N 0.774
Pm027028 Prunus mume Pm027028 N 0.774
GLYMA10G10240 Glycine max GLYMA10G10240 N 0.774
Cla015490 Citrullus lanatus Cla015490 I 0.774
Aquca_009_00676 Aquilegia coerulea Aquca_009_00676 N 0.774
POPTR_0006s05210 Populus trichocarpa POPTR_0006s05210 I 0.774
Eucgr.A02381 Eucalyptus grandis Eucgr.A02381 N 0.774
29333.m001059 Ricinus communis 29333.m001059 N 0.774
Eucgr.C00842 Eucalyptus grandis Eucgr.C00842 N 0.774
MDP0000183865 Malus domestica MDP0000183865 I 0.773
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N 0.768
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N 0.768
Pm026038 Prunus mume Pm026038 N 0.768
Ca_14455 Cicer arietinum Ca_14455 N 0.768
SapurV1A.1209s0040 Salix purpurea SapurV1A.1209s0040 N 0.768
chr1.CM0361.430.nc Lotus japonicus chr1.CM0361.430.nc N 0.768
MDP0000375005 Malus domestica MDP0000375005 N 0.768
MDP0000948645 Malus domestica MDP0000948645 N 0.768
MTR_7g106450 Medicago truncatula MTR_7g106450 N 0.768
GLYMA09G07960 Glycine max GLYMA09G07960 I 0.755
GLYMA12G36540 Glycine max GLYMA12G36540 I 0.755
Lus10012202.g Linum usitatissimum Lus10012202.g I 0.755
Ca_11593 Cicer arietinum Ca_11593 N 0.755
GLYMA15G18970 Glycine max GLYMA15G18970 I 0.755
POPTR_0018s07220 Populus trichocarpa POPTR_0018s07220 N 0.755
AMTR_s00103p00144230 Amborella trichopoda AMTR_s00103p00144230 I 0.755
VIT_08s0007g08250 Vitis vinifera VIT_08s0007g08250 I 0.755
Gorai.004G066000 Gossypium raimondii Gorai.004G066000 I 0.755
Aquca_026_00359 Aquilegia coerulea Aquca_026_00359 N 0.755
GLYMA17G05920 Glycine max GLYMA17G05920 I 0.755
Si019645m.g Setaria italica Si019645m.g N 0.755
Eucgr.A02570 Eucalyptus grandis Eucgr.A02570 N 0.755
MDP0000223651 Malus domestica MDP0000223651 N 0.755
OMERI07G18960 Oryza meridionalis OMERI07G18960 N 0.755
GSMUA_Achr7G01070_001 Musa acuminata GSMUA_Achr7G01070_001 N 0.755
Ciclev10005144m.g Citrus clementina Ciclev10005144m.g I 0.755
GRMZM5G857944 Zea mays GRMZM5G857944 N 0.755
orange1.1g017825m.g Citrus sinensis orange1.1g017825m.g I 0.755
Lus10011326.g Linum usitatissimum Lus10011326.g I 0.755
MDP0000827821 Malus domestica MDP0000827821 N 0.755
MDP0000506954 Malus domestica MDP0000506954 N 0.755
MTR_1g056530 Medicago truncatula MTR_1g056530 N 0.750
MDP0000785523 Malus domestica MDP0000785523 N 0.750
GLYMA02G35190 Glycine max GLYMA02G35190 N 0.750
MDP0000588222 Malus domestica MDP0000588222 N 0.750
MDP0000129029 Malus domestica MDP0000129029 N 0.750
PK20005.1 Cannabis sativa PK20005.1 N 0.750
SapurV1A.0087s0010 Salix purpurea SapurV1A.0087s0010 N 0.736
VIT_13s0064g00860 Vitis vinifera VIT_13s0064g00860 I 0.736
SapurV1A.1588s0020 Salix purpurea SapurV1A.1588s0020 N 0.736
Ca_20250 Cicer arietinum Ca_20250 N 0.736
Pavir.Ia00780 Panicum virgatum Pavir.Ia00780 I 0.736
mgf012950m Mimulus guttatus mgf012950m I 0.736
mg014677m Mimulus guttatus mg014677m N 0.736
Eucgr.F03169 Eucalyptus grandis Eucgr.F03169 I 0.736
estExt_fgenesh1_pg.C_420118 Physcomitrella patens estExt_fgenesh1_pg.C_420118 N 0.736
Pavir.J08102 Panicum virgatum Pavir.J08102 I 0.736
Cla000845 Citrullus lanatus Cla000845 N 0.736
TRIUR3_09920 Triticum urartu TRIUR3_09920 I 0.736
Si037045m.g Setaria italica Si037045m.g I 0.736
LPERR12G16030 Leersia perrieri LPERR12G16030 N 0.736
GLYMA15G13660 Glycine max GLYMA15G13660 N 0.736
LPERR03G25340 Leersia perrieri LPERR03G25340 I 0.736
Sb01g011220 Sorghum bicolor Sb01g011220 I 0.736
GLYMA09G02770 Glycine max GLYMA09G02770 N 0.736
BRADI1G11800 Brachypodium distachyon BRADI1G11800 I 0.736
F775_09086 Aegilops tauschii F775_09086 N 0.736
ORUFI07G03340 Oryza rufipogon ORUFI07G03340 N 0.736
Traes_4AL_7C4C68FD0 Triticum aestivum Traes_4AL_7C4C68FD0 I 0.736
LPERR08G05240 Leersia perrieri LPERR08G05240 N 0.736
GRMZM2G091964 Zea mays GRMZM2G091964 I 0.736
Traes_4BS_B7B7EFF37 Triticum aestivum Traes_4BS_B7B7EFF37 I 0.736
Traes_5BS_F1DE20B4B Triticum aestivum Traes_5BS_F1DE20B4B N 0.736
Traes_4DS_AFBE29C20 Triticum aestivum Traes_4DS_AFBE29C20 I 0.736
Traes_5AS_378F353CF Triticum aestivum Traes_5AS_378F353CF N 0.736
Traes_5DS_443F1993A Triticum aestivum Traes_5DS_443F1993A N 0.736
TRIUR3_28596 Triticum urartu TRIUR3_28596 N 0.736
GSMUA_Achr4G28390_001 Musa acuminata GSMUA_Achr4G28390_001 N 0.736
Gorai.002G151800 Gossypium raimondii Gorai.002G151800 I 0.732
SapurV1A.0133s0410 Salix purpurea SapurV1A.0133s0410 I 0.732
Gorai.003G093300 Gossypium raimondii Gorai.003G093300 I 0.732
PRUPE_ppa016008mg Prunus persica PRUPE_ppa016008mg N 0.732
TCM_024732 Theobroma cacao TCM_024732 I 0.732
cassava38260.valid.m1 Manihot esculenta cassava38260.valid.m1 I 0.732
29912.m005288 Ricinus communis 29912.m005288 N 0.732
OBART02G34510 Oryza barthii OBART02G34510 I 0.717
LPERR03G22840 Leersia perrieri LPERR03G22840 N 0.717
BRADI4G01380 Brachypodium distachyon BRADI4G01380 N 0.717
ONIVA02G36550 Oryza nivara ONIVA02G36550 I 0.717
OMERI02G32760 Oryza meridionalis OMERI02G32760 I 0.717
LPERR02G28390 Leersia perrieri LPERR02G28390 I 0.717
orange1.1g026474m.g Citrus sinensis orange1.1g026474m.g N 0.717
GSMUA_Achr9G10300_001 Musa acuminata GSMUA_Achr9G10300_001 N 0.717
LPERR07G03140 Leersia perrieri LPERR07G03140 N 0.717
OPUNC02G31840 Oryza punctata OPUNC02G31840 I 0.717
MTR_2g030170 Medicago truncatula MTR_2g030170 N 0.717
MVLG_01455 Microbotryum violaceum MVLG_01455 I 0.717
Gorai.010G086300 Gossypium raimondii Gorai.010G086300 N 0.717
MLOC_76757 Hordeum vulgare MLOC_76757 N 0.717
OB02G41320 Oryza brachyantha OB02G41320 I 0.717
OB08G15650 Oryza brachyantha OB08G15650 N 0.717
ORUFI12G21270 Oryza rufipogon ORUFI12G21270 N 0.717
Cucsa.124180 Cucumis sativus Cucsa.124180 N 0.717
Cucsa.048230 Cucumis sativus Cucsa.048230 N 0.717
Solyc01g087240.2 Solanum lycopersicum Solyc01g087240.2 I 0.717
BGIOSGA035818 Oryza indica BGIOSGA035818 N 0.717
Thhalv10009032m.g Eutrema salsugineum Thhalv10009032m.g N 0.717
PDK_20s1414021g001 Phoenix dactylifera PDK_20s1414021g001 N 0.717
TCM_040712 Theobroma cacao TCM_040712 I 0.717
AMTR_s00048p00192930 Amborella trichopoda AMTR_s00048p00192930 I 0.717
Ca_07995 Cicer arietinum Ca_07995 N 0.717
Cla008690 Citrullus lanatus Cla008690 N 0.717
Cla009990 Citrullus lanatus Cla009990 N 0.717
Bo5g105110 Brassica oleracea Bo5g105110 I 0.717
Bo5g063060 Brassica oleracea Bo5g063060 N 0.717
OPUNC08G05330 Oryza punctata OPUNC08G05330 N 0.717
Bra031242 Brassica rapa Bra031242 I 0.717
GSMUA_Achr4G03600_001 Musa acuminata GSMUA_Achr4G03600_001 N 0.717
ORGLA02G0298500 Oryza glaberrima ORGLA02G0298500 I 0.717
Carubv10010359m.g Capsella rubella Carubv10010359m.g N 0.717
Cagra.1508s0155 Capsella grandiflora Cagra.1508s0155 N 0.717
OS02G0776400 Oryza sativa OS02G0776400 I 0.717
OS12G0618600 Oryza sativa OS12G0618600 N 0.717
Ciclev10016491m.g Citrus clementina Ciclev10016491m.g N 0.717
Thhalv10021240m.g Eutrema salsugineum Thhalv10021240m.g I 0.717
Bostr.15697s0348 Boechera stricta Bostr.15697s0348 N 0.717
Bra032395 Brassica rapa Bra032395 N 0.717
BGIOSGA024793 Oryza indica BGIOSGA024793 N 0.714
GLYMA13G27230 Glycine max GLYMA13G27230 I 0.714
AMTR_s00155p00071520 Amborella trichopoda AMTR_s00155p00071520 N 0.714
PDK_20s1462571g003 Phoenix dactylifera PDK_20s1462571g003 N 0.714
OGLUM07G02990 Oryza glumaepatula OGLUM07G02990 N 0.714
POPTR_0006s14740 Populus trichocarpa POPTR_0006s14740 N 0.714
mgf025421m Mimulus guttatus mgf025421m N 0.714
PGSC0003DMG400000272 Solanum tuberosum PGSC0003DMG400000272 N 0.714
OS07G0158500 Oryza sativa OS07G0158500 N 0.714
Cucsa.374630 Cucumis sativus Cucsa.374630 I 0.714
cassava41983.valid.m1 Manihot esculenta cassava41983.valid.m1 N 0.714
TCM_037576 Theobroma cacao TCM_037576 N 0.714
Solyc12g009050.1 Solanum lycopersicum Solyc12g009050.1 N 0.714
cassava24247.valid.m1 Manihot esculenta cassava24247.valid.m1 N 0.714
ORGLA07G0030900 Oryza glaberrima ORGLA07G0030900 N 0.714
OPUNC07G03530 Oryza punctata OPUNC07G03530 N 0.714
MTR_2g041090 Medicago truncatula MTR_2g041090 N 0.714
MDP0000279028 Malus domestica MDP0000279028 N 0.714
GSMUA_Achr4G31650_001 Musa acuminata GSMUA_Achr4G31650_001 N 0.714
Gorai.009G115000 Gossypium raimondii Gorai.009G115000 N 0.714
OB03G37700 Oryza brachyantha OB03G37700 I 0.714
VIT_11s0016g01480 Vitis vinifera VIT_11s0016g01480 N 0.714
evm.TU.supercontig_125.6 Carica papaya evm.TU.supercontig_125.6 I 0.714
gene12709-v1.0-hybrid Fragaria vesca gene12709-v1.0-hybrid N 0.714
GSMUA_Achr4G11090_001 Musa acuminata GSMUA_Achr4G11090_001 I 0.714