YBX3 (Oryctolagus cuniculus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSOCUG00000001889 T164681_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.820 0.820
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.820 0.820
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.820 0.820
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.820 0.820
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000019910 CSD 70 134

Links

Other CSD family TFs
Other Oryctolagus cuniculus TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
YBX1 Homo sapiens ENSG00000065978 D 0.959
LotgiG78612 Lottia gigantea LotgiG78612 I 0.803
YBX2 Tetraodon nigroviridis ENSTNIG00000010139 I 0.721
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.820
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.820
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.820
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.803
ENSSTOG00000027979 Ictidomys tridecemlineatus ENSSTOG00000027979 I 0.705
ENSSTOG00000026413 Ictidomys tridecemlineatus ENSSTOG00000026413 I 0.705
ENSSTOG00000022212 Ictidomys tridecemlineatus ENSSTOG00000022212 I 0.705
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.803
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.770
ENSSTOG00000000116 Ictidomys tridecemlineatus ENSSTOG00000000116 I 0.770
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.803
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.820
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.820
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.787
KGM_01291 Danaus plexippus KGM_01291 I 0.721
ISCW005281 Ixodes scapularis ISCW005281 I 0.705
HMEL008461 Heliconius melpomene HMEL008461 I 0.721
GB54355 Apis mellifera GB54355 I 0.754
GA23502 Drosophila pseudoobscura FBgn0244903 I 0.738
GK16710 Drosophila willistoni FBgn0218712 I 0.738
GL15684 Drosophila persimilis FBgn0153288 I 0.738
GF10852 Drosophila ananassae FBgn0087892 I 0.738
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.820
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.754
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.820
YBX3 Tursiops truncatus ENSTTRG00000008045 I 1.000
ENSSSCG00000028485 Sus scrofa ENSSSCG00000028485 I 0.770
YBX2 Sus scrofa ENSSSCG00000017938 I 0.803
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.738
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.803
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.820
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.820
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.820
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.820
YBX2 Procavia capensis ENSPCAG00000008019 I 0.803
YBX3 Procavia capensis ENSPCAG00000001397 I 0.803
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.803
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.787
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.820
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.820
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.820
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.770
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.940
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.787
YBX3 Sus scrofa ENSSSCG00000000633 I 0.820
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.820
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.952
ENSSHAG00000007786 Sarcophilus harrisii ENSSHAG00000007786 I 0.803
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.803
YBX2 Sorex araneus ENSSARG00000000488 I 0.787
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.770
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.820
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.803
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.820
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.820
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.820
YBX2 Pan troglodytes ENSPTRG00000008673 I 0.727
ybx1 Oryzias latipes ENSORLG00000004225 I 0.820
MCINX006244 Melitaea cinxia MCINX006244 I 0.721
MDOA013639 Musca domestica MDOA013639 I 0.738
AALB005039 Anopheles albimanus AALB005039 I 0.705
ybx1.S Xenopus laevis XB-GENE-865405 I 0.820
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.803
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.820
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.803
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.820
ybx3 Xenopus tropicalis XB-GENE-1007558 I 0.727
SMU15014702 Schmidtea mediterranea SMU15014702 I 0.738
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.738
LCUP004743 Lucilia cuprina LCUP004743 I 0.738
CAA42778 Xenopus laevis CAA42778 I 0.820
AAI30161 Xenopus laevis AAI30161 I 0.820
AAH42217 Xenopus laevis AAH42217 I 0.820
AARA007412 Anopheles arabiensis AARA007412 I 0.705
ACHR003797 Anopheles christyi ACHR003797 I 0.705
BGLB002206 Biomphalaria glabrata BGLB002206 I 0.787
ASTEI02878 Anopheles stephensi ASTEI02878 I 0.705
ASIS019575 Anopheles sinensis ASIS019575 I 0.721
AQUA011660 Anopheles quadriannulatus AQUA011660 I 0.705
AMIN009954 Anopheles minimus AMIN009954 I 0.705
AMEM010049 Anopheles merus AMEM010049 I 0.705
AMEC011905 Anopheles melas AMEC011905 I 0.705
AFUN005441 Anopheles funestus AFUN005441 I 0.705
AFAF015865 Anopheles farauti AFAF015865 I 0.705
AEPI000589 Anopheles epiroticus AEPI000589 I 0.705
ADIR008587 Anopheles dirus ADIR008587 I 0.705
ACUA007180 Anopheles culicifacies ACUA007180 I 0.705
ACOM024661 Anopheles coluzzii ACOM024661 I 0.705
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.803
Ocbimv22002282m.g Octopus bimaculoides Ocbimv22002282m.g I 0.787
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.770
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.820
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 1.000
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.770
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.820
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.949
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.803
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.820
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.770
Aan_R014295 Calypte anna Aan_R014295 I 0.820
Aan_R001440 Calypte anna Aan_R001440 I 0.820
YQE_07192 Dendroctonus ponderosae YQE_07192 I 0.770
TC013925 Tribolium castaneum TC013925 I 0.738
RPRC001993 Rhodnius prolixus RPRC001993 I 0.721
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I 0.742
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.803
Tal_R011198 Tyto alba Tal_R011198 I 0.770
Tal_R003478 Tyto alba Tal_R003478 I 0.973
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.820
Pvit_07856 Pogona vitticeps Pvit_07856 I 0.904
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.803
Ogr02658 Ophisaurus gracilis Ogr02658 I 0.770
Myotis_brandtii_YBX2_10021025 Myotis brandtii Myotis_brandtii_YBX2_10021025 I 0.754
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.958
Hsal_07052--XP_393344.3_APIME Harpegnathos saltator Hsal_07052--XP_393344.3_APIME I 0.738
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.770
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.820
ENSP00000389639-D2 Bos grunniens ENSP00000389639-D2 I 0.770
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.820
PHUM156710 Pediculus humanus PHUM156710 I 0.754
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.803
YBX3 Echinops telfairi ENSETEG00000002557 I 0.820
ENSCSAG00000001168 Chlorocebus sabaeus ENSCSAG00000001168 I 0.770
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.820
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.820
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.803
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.754
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.770
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.770
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.803
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.797
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.770
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.820
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.754
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.803
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.820
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.803
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.820
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.787
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.820
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.820
YBX3 Equus caballus ENSECAG00000013777 I 0.820
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.803
YBX2 Equus caballus ENSECAG00000009996 I 0.803
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.820
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.820
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I 0.705
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.803
ybx1 Danio rerio ENSDARG00000004757 I 0.820
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.721
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.803
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.754
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.820
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I 0.754
ENSAMEG00000018423 Ailuropoda melanoleuca ENSAMEG00000018423 I 0.721
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.803
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.820
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.820
DAPPUDRAFT_311200 Daphnia pulex DAPPUDRAFT_311200 I 0.738
CGI_10014112 Crassostrea gigas CGI_10014112 I 0.727
CapteG166603 Capitella teleta CapteG166603 I 0.754
CapteG121832 Capitella teleta CapteG121832 I 0.765
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.721
AGAP006108 Anopheles gambiae AGAP006108 I 0.705
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.770
ACEP12641 Atta cephalotes ACEP12641 I 0.705
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.820
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.820
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.820
ENSCAFG00000030502 Canis familiaris ENSCAFG00000030502 I 0.770
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.803
ENSCAFG00000016523 Canis familiaris ENSCAFG00000016523 I 0.705
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.705
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.803
YBX3 Canis familiaris ENSCAFG00000013401 I 0.820
ENSCAFG00000005162 Canis familiaris ENSCAFG00000005162 I 0.724
YBX1 Canis familiaris ENSCAFG00000002541 I 0.820
YBX1 Bos taurus ENSBTAG00000017368 I 0.820
YBX3 Bos taurus ENSBTAG00000009663 I 0.820
YBX2 Bos taurus ENSBTAG00000009126 I 0.803
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.820
AAEL001375 Aedes aegypti AAEL001375 I 0.705
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.721
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.820
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.803
Ybx3 Mus musculus ENSMUSG00000030189 I 0.820
Ybx1 Mus musculus ENSMUSG00000028639 I 0.820
Ybx2 Mus musculus ENSMUSG00000018554 I 0.803
ENSMPUG00000018977 Mustela putorius furo ENSMPUG00000018977 I 0.705
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 0.803
ENSMPUG00000011810 Mustela putorius furo ENSMPUG00000011810 I 0.824
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.754
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.770
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.803
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.727
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.820
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.820
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.820
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.820
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.705
ENSOGAG00000032745 Otolemur garnettii ENSOGAG00000032745 I 0.705
ENSOGAG00000030653 Otolemur garnettii ENSOGAG00000030653 I 0.705
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.721
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.820
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.803
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.770
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.787
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.882
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.820
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.820
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.803
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.803
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.803
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.820
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.712
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.770
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.959
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.940
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.820
YBX1 Gallus gallus ENSGALG00000004848 I 0.820
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.820
YBX3 Homo sapiens ENSG00000060138 I 0.820
YBX2 Homo sapiens ENSG00000006047 I 0.727
YBX3 Felis catus ENSFCAG00000027748 I 0.820
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.770
YBX2 Felis catus ENSFCAG00000018097 I 0.803
ENSFALG00000010305 Ficedula albicollis ENSFALG00000010305 I 0.870
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.787
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.820
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.820
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.770
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.787
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.820
YBX2 Microcebus murinus ENSMICG00000012453 I 0.754
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.820
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.820
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I 1.000
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.803
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.820
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.820
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.902
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.820
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.820