ENSSSCG00000015308 (Sus scrofa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSSCG00000015308 T164792_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.879 0.879
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.879 0.879
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.879 0.879
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.879 0.879
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000016235 CSD 43 112

Links

Other CSD family TFs
Other Sus scrofa TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.896
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.894
YBX3 Tursiops truncatus ENSTTRG00000008045 I 0.894
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.892
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.879
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.879
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.879
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.879
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.879
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.879
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.879
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.879
YBX2 Procavia capensis ENSPCAG00000008019 I 0.879
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.879
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.879
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.879
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.879
ybx1 Oryzias latipes ENSORLG00000004225 I 0.879
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.879
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.879
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.879
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.879
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.879
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.879
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.879
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.879
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.879
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.879
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.879
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.879
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.879
Ybx2 Mus musculus ENSMUSG00000018554 I 0.879
Ybx1 Mus musculus ENSMUSG00000028639 I 0.879
Ybx3 Mus musculus ENSMUSG00000030189 I 0.879
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.879
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.879
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.879
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.879
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.879
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.879
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.879
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.879
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.879
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.879
Aan_R014295 Calypte anna Aan_R014295 I 0.879
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.879
Aan_R001440 Calypte anna Aan_R001440 I 0.879
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.879
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.879
CAA42778 Xenopus laevis CAA42778 I 0.879
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.879
ybx1.S Xenopus laevis XB-GENE-865405 I 0.879
AAI30161 Xenopus laevis AAI30161 I 0.879
AAH42217 Xenopus laevis AAH42217 I 0.879
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.879
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.879
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.879
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.879
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.879
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.879
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.879
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.879
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.879
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.879
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.879
YBX3 Sus scrofa ENSSSCG00000000633 I 0.879
YBX2 Sus scrofa ENSSSCG00000017938 I 0.879
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.879
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.879
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.879
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.879
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.879
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.879
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.879
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.879
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.879
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.879
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.879
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.879
YBX3 Equus caballus ENSECAG00000013777 I 0.879
YBX3 Bos taurus ENSBTAG00000009663 I 0.879
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.879
YBX1 Bos taurus ENSBTAG00000017368 I 0.879
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.879
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.879
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.879
YBX2 Equus caballus ENSECAG00000009996 I 0.879
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.879
ybx1 Danio rerio ENSDARG00000004757 I 0.879
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.879
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.879
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.879
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.879
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.879
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.879
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.879
YBX2 Bos taurus ENSBTAG00000009126 I 0.879
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.879
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.879
YBX3 Echinops telfairi ENSETEG00000002557 I 0.879
YBX1 Homo sapiens ENSG00000065978 D 0.879
YBX3 Homo sapiens ENSG00000060138 I 0.879
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.879
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.879
YBX3 Canis familiaris ENSCAFG00000013401 I 0.879
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.879
YBX1 Gallus gallus ENSGALG00000004848 I 0.879
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.879
YBX3 Felis catus ENSFCAG00000027748 I 0.879
YBX1 Canis familiaris ENSCAFG00000002541 I 0.879
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.879
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.879
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.879
YBX2 Felis catus ENSFCAG00000018097 I 0.879
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.872
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I 0.865
Tal_R003478 Tyto alba Tal_R003478 I 0.865
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.864
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.864
YBX2 Pan troglodytes ENSPTRG00000008673 I 0.864
YBX3 Procavia capensis ENSPCAG00000001397 I 0.864
YBX2 Sorex araneus ENSSARG00000000488 I 0.864
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.864
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.864
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I 0.864
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.864
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.864
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.864
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.864
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.864
YBX2 Homo sapiens ENSG00000006047 I 0.864
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.864
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.864
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.864
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.860
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.857
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.848
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.848
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.848
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.848
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.848
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.848
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.833
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.833
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.833
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.833
ybx3 Xenopus tropicalis XB-GENE-1007558 I 0.833
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.833
Pvit_07856 Pogona vitticeps Pvit_07856 I 0.827
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.821
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.818
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.818
ENSCAFG00000030502 Canis familiaris ENSCAFG00000030502 I 0.818
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.818
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.818
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.818
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.818
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.818
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I 0.803
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.803
YBX3 Otolemur garnettii ENSOGAG00000013245 I 0.803
ENSOGAG00000034677 Otolemur garnettii ENSOGAG00000034677 I 0.803
ENSFALG00000010305 Ficedula albicollis ENSFALG00000010305 I 0.796
YBX2 Tetraodon nigroviridis ENSTNIG00000010139 I 0.788
ENSORLG00000006269 Oryzias latipes ENSORLG00000006269 I 0.788
ENSPFOG00000007181 Poecilia formosa ENSPFOG00000007181 I 0.788
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.788
ENSAMEG00000018423 Ailuropoda melanoleuca ENSAMEG00000018423 I 0.788
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.788
ENSGMOG00000007765 Gadus morhua ENSGMOG00000007765 I 0.788
YBX2 Gasterosteus aculeatus ENSGACG00000019392 I 0.788
ENSXMAG00000015755 Xiphophorus maculatus ENSXMAG00000015755 I 0.788
ENSMLUG00000024638 Myotis lucifugus ENSMLUG00000024638 I 0.780
ENSSHAG00000007786 Sarcophilus harrisii ENSSHAG00000007786 I 0.780
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.778
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.773
Ocbimv22002282m.g Octopus bimaculoides Ocbimv22002282m.g I 0.773
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.773
CapteG166603 Capitella teleta CapteG166603 I 0.773
ENSOGAG00000027853 Otolemur garnettii ENSOGAG00000027853 I 0.773
LotgiG78612 Lottia gigantea LotgiG78612 I 0.773
BGLB002206 Biomphalaria glabrata BGLB002206 I 0.773
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.773
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.769
SINV21160 Solenopsis invicta SINV21160 I 0.766
ENSMPUG00000011810 Mustela putorius furo ENSMPUG00000011810 I 0.765
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.765
ENSCAFG00000005162 Canis familiaris ENSCAFG00000005162 I 0.759
ENSOGAG00000030360 Otolemur garnettii ENSOGAG00000030360 I 0.758
YQE_07192 Dendroctonus ponderosae YQE_07192 I 0.758
CGI_10014112 Crassostrea gigas CGI_10014112 I 0.758
ISCW005281 Ixodes scapularis ISCW005281 I 0.758
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 0.758
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.758
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.758
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.758
GB54355 Apis mellifera GB54355 I 0.742
PHUM156710 Pediculus humanus PHUM156710 I 0.742
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.742
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.742
GA23502 Drosophila pseudoobscura FBgn0244903 I 0.742
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.742
ENSSARG00000012628 Sorex araneus ENSSARG00000012628 I 0.742
GH16919 Drosophila grimshawi FBgn0124390 I 0.742
GI13673 Drosophila mojavensis FBgn0136428 I 0.742
GF10852 Drosophila ananassae FBgn0087892 I 0.742
GJ14010 Drosophila virilis FBgn0201228 I 0.742
GK16710 Drosophila willistoni FBgn0218712 I 0.742
GL15684 Drosophila persimilis FBgn0153288 I 0.742
YBX3 Oryctolagus cuniculus ENSOCUG00000001889 I 0.738
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.727
ENSMICG00000004602 Microcebus murinus ENSMICG00000004602 I 0.727
DAPPUDRAFT_311200 Daphnia pulex DAPPUDRAFT_311200 I 0.727
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I 0.727
ENSOGAG00000030653 Otolemur garnettii ENSOGAG00000030653 I 0.727
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.727
ENSOGAG00000024472 Otolemur garnettii ENSOGAG00000024472 I 0.727
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.727
ENSOGAG00000032745 Otolemur garnettii ENSOGAG00000032745 I 0.727
YBX2 Echinops telfairi ENSETEG00000014271 I 0.727
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.727
Hsal_07052--XP_393344.3_APIME Harpegnathos saltator Hsal_07052--XP_393344.3_APIME I 0.727
LCUP004743 Lucilia cuprina LCUP004743 I 0.727
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.727
ENSORLG00000018683 Oryzias latipes ENSORLG00000018683 I 0.727
GD12750 Drosophila simulans FBgn0184477 I 0.727
GE20150 Drosophila yakuba FBgn0237472 I 0.727
YBX3 Vicugna pacos ENSVPAG00000000876 I 0.727
ENSCING00000010654 Ciona intestinalis ENSCING00000010654 I 0.727
GM24682 Drosophila sechellia FBgn0179545 I 0.727
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.727
yps Drosophila melanogaster FBgn0022959 I 0.727
KGM_01291 Danaus plexippus KGM_01291 I 0.727
HMEL008461 Heliconius melpomene HMEL008461 I 0.727
TC013925 Tribolium castaneum TC013925 I 0.727
MCINX006244 Melitaea cinxia MCINX006244 I 0.727
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I 0.727
PHUM156720 Pediculus humanus PHUM156720 I 0.727
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.723
ENSFCAG00000028116 Felis catus ENSFCAG00000028116 N 0.723
LLOJ009520 Lutzomyia longipalpis LLOJ009520 I 0.712
ENSSTOG00000022212 Ictidomys tridecemlineatus ENSSTOG00000022212 I 0.712
ENSSTOG00000027979 Ictidomys tridecemlineatus ENSSTOG00000027979 I 0.712
ENSSTOG00000026413 Ictidomys tridecemlineatus ENSSTOG00000026413 I 0.712
ASU_11432 Ascaris suum ASU_11432 I 0.712
TCNE_0001642201 Toxocara canis TCNE_0001642201 I 0.712
TMUE_s0011007500 Trichuris muris TMUE_s0011007500 I 0.712
TTRE_0000405201 Trichuris trichiura TTRE_0000405201 I 0.712
D918_04890 Trichuris suis D918_04890 I 0.712
ENSSSCG00000022235 Sus scrofa ENSSSCG00000022235 I 0.712
ALUE_0000394301 Ascaris lumbricoides ALUE_0000394301 I 0.712
ASIM_0001243501 Anisakis simplex ASIM_0001243501 I 0.712
MDOA013639 Musca domestica MDOA013639 I 0.712
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.712
HelroG133388 Helobdella robusta HelroG133388 I 0.712
ENSMPUG00000018977 Mustela putorius furo ENSMPUG00000018977 I 0.712
RPRC001993 Rhodnius prolixus RPRC001993 I 0.712
ENSOGAG00000024681 Otolemur garnettii ENSOGAG00000024681 I 0.712
ENSSSCG00000028681 Sus scrofa ENSSSCG00000028681 I 0.712
ENSPSIG00000009540 Pelodiscus sinensis ENSPSIG00000009540 I 0.712
CapteG58124 Capitella teleta CapteG58124 I 0.712
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.712
ENSCAFG00000016523 Canis familiaris ENSCAFG00000016523 I 0.712
Alligator_sinensis_CCG003309.1 Alligator sinensis Alligator_sinensis_CCG003309.1 I 0.712
CapteG50882 Capitella teleta CapteG50882 I 0.712
CapteG121832 Capitella teleta CapteG121832 I 0.706