Gfo_R011360 (Geospiza fortis)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
Gfo_R011360 T167430_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
0.997 0.997
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW

WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
0.997 0.997
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT

ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.990 0.990
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT

ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.990 0.990
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN

NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.990 0.990
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN

NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.990 0.990
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.990 0.990
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT

ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.990 0.990
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH

DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.990 0.990
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN

NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.990 0.990
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG

CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.990 0.990
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB

VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.990 0.990
CUX1
M10427_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.990 0.990
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR

YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.990 0.990
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT

ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.888 0.888
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA

TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.888 0.888
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN

NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.888 0.888
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB

VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.888 0.888
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD

HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.881 0.881
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R011360 CUT 412 489
Gfo_R011360 CUT 798 872
Gfo_R011360 CUT 981 1059
Gfo_R011360 Homeodomain 1104 1160

Links

Other CUT,Homeodomain family TFs
Other Geospiza fortis TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.882
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.979
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.882
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 1.000
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 1.000
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.865
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.871
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.983
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 1.000
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.903
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.888
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.990
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.885
CUX1 Bos taurus ENSBTAG00000010659 I 0.990
CUX2 Bos taurus ENSBTAG00000008571 I 0.885
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.979
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.885
Aan_R003487 Calypte anna Aan_R003487 I 1.000
Aan_R010335 Calypte anna Aan_R010335 I 0.874
CUX2 Canis familiaris ENSCAFG00000008575 I 0.885
CUX1 Canis familiaris ENSCAFG00000013749 D 0.990
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.882
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.881
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.997
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.983
cux1a Danio rerio ENSDARG00000078459 I 0.937
cux2b Danio rerio ENSDARG00000086345 I 0.878
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.888
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.979
CUX1 Felis catus ENSFCAG00000008074 I 0.979
CUX2 Felis catus ENSFCAG00000003176 I 0.885
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 1.000
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.882
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.855
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.864
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 1.000
CUX2 Gallus gallus ENSGALG00000004598 I 0.878
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.856
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.861
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.887
ENSGGOG00000016960 Gorilla gorilla ENSGGOG00000016960 I 0.724
CUX2 Homo sapiens ENSG00000111249 D 0.885
CUX1 Homo sapiens ENSG00000257923 D 0.983
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.976
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.882
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.878
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.979
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.895
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.952
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.879
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.979
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.983
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.885
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.983
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.875
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.878
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.996
CUX1 Microcebus murinus ENSMICG00000010274 I 0.992
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.997
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.878
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.882
Cux2 Mus musculus ENSMUSG00000042589 D 0.875
Cux1 Mus musculus ENSMUSG00000029705 D 0.990
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.882
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.972
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.990
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.885
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.983
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.885
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.882
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.986
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.864
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.993
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.839
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.865
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.878
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.885
cux2b Oryzias latipes ENSORLG00000015973 I 0.868
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.986
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.885
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.979
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.882
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.983
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.762
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.983
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.997
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.875
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.997
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.872
CUX1 Procavia capensis ENSPCAG00000004482 I 0.784
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.987
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.882
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.990
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.865
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.878
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.997
CUX2 Sus scrofa ENSSSCG00000009831 I 0.885
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.862
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 1.000
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.826
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.868
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.864
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.842
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.986
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.882
Tal_R013483 Tyto alba Tal_R013483 I 0.989
cux2 Xenopus tropicalis XB-GENE-487236 I 0.861
XP_002942311 Xenopus tropicalis XP_002942311 I 0.976
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.872
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.827