CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cux2
(
Mus musculus
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSMUSG00000042589
T167157_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene is a member of the Cut family of transcription factors that have multiple DNA binding domains and regulate cell proliferation and differentiation. This gene is primarily expressed in nervous tissues where it controls the proliferation of neuronal precursors, and may play a role in organogenesis earlier during embryonic development. Mice lacking the encoded protein exhibit smaller spinal cords with deficits in neural progenitor development as well as in neuroblast and interneuron differentiation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2015]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD
HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.983
0.983
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA
TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.983
0.983
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN
NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.983
0.983
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB
VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.983
0.983
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.878
0.878
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.878
0.878
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN
NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.878
0.878
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN
NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.878
0.878
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.878
0.878
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
0.878
0.878
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT
ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.878
0.878
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.878
0.878
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN
NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.878
0.878
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.878
0.878
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB
VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.878
0.878
CUX1
M10427_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.878
0.878
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
0.878
0.878
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR
YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.878
0.878
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000083497
CUT
487
565
EEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRT
ENSMUSP00000083497
CUT
833
909
MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQGQG
ENSMUSP00000083497
CUT
988
1065
MSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLSDPHNVEKLR
ENSMUSP00000083497
Homeodomain
1114
1170
KKPRVVLAPAEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRR
ENSMUSP00000107381
CUT
487
565
EEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRT
ENSMUSP00000107381
CUT
833
909
MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQGQG
ENSMUSP00000107381
CUT
988
1065
MSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLSDPHNVEKLR
ENSMUSP00000107381
Homeodomain
1114
1170
KKPRVVLAPAEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRR
ENSMUSP00000130302
CUT
487
565
EEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDEQNVLALRT
ENSMUSP00000130302
CUT
833
909
MYREVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQGQG
ENSMUSP00000130302
CUT
988
1065
MSPELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLSDPHNVEKLR
ENSMUSP00000130302
Homeodomain
1114
1170
KKPRVVLAPAEKEALRKAYQLEPYPSQQTIELLSFQLNLKTNTVINWFHNYRSRMRR
Links
Other
CUT,Homeodomain
family TFs
Other
Mus musculus
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CUX2
Pteropus vampyrus
ENSPVAG00000013176
I
0.990
CUX2
Ochotona princeps
ENSOPRG00000006461
I
0.986
CUX2
Otolemur garnettii
ENSOGAG00000029919
I
0.986
ENSNLEG00000000470
Nomascus leucogenys
ENSNLEG00000000470
I
0.986
CUX2
Cavia porcellus
ENSCPOG00000020483
I
0.986
CUX2
Homo sapiens
ENSG00000111249
D
0.986
CUX2
Callithrix jacchus
ENSCJAG00000011694
I
0.986
CUX2
Bos taurus
ENSBTAG00000008571
I
0.986
ENSP00000261726-D1
Bos grunniens
ENSP00000261726-D1
I
0.986
ENSP00000261726
Macaca fascicularis
ENSP00000261726
I
0.986
CUX2
Sus scrofa
ENSSSCG00000009831
I
0.986
Cux2
Rattus norvegicus
ENSRNOG00000001259
I
0.986
CUX2
Loxodonta africana
ENSLAFG00000001145
I
0.983
CUX2
Myotis lucifugus
ENSMLUG00000003239
I
0.983
CUX2
Tursiops truncatus
ENSTTRG00000000945
I
0.983
CUX2
Oryctolagus cuniculus
ENSOCUG00000021923
I
0.983
ENSSTOG00000002242
Ictidomys tridecemlineatus
ENSSTOG00000002242
I
0.983
ENSOARG00000017879
Ovis aries
ENSOARG00000017879
I
0.983
CUX2
Felis catus
ENSFCAG00000003176
I
0.979
CUX2
Canis familiaris
ENSCAFG00000008575
I
0.979
Myotis_brandtii_CUX2_10011523
Myotis brandtii
Myotis_brandtii_CUX2_10011523
I
0.979
Cmyd_10015658
Chelonia mydas
Cmyd_10015658
I
0.976
Gfo_R003142
Geospiza fortis
Gfo_R003142
I
0.975
CUX2
Dasypus novemcinctus
ENSDNOG00000039959
I
0.972
Alligator_sinensis_CCG016555.1
Alligator sinensis
Alligator_sinensis_CCG016555.1
I
0.972
ENSMPUG00000002207
Mustela putorius furo
ENSMPUG00000002207
I
0.972
CUX2
Gallus gallus
ENSGALG00000004598
I
0.972
ENSAMEG00000013799
Ailuropoda melanoleuca
ENSAMEG00000013799
I
0.972
CUX2
Meleagris gallopavo
ENSMGAG00000005225
I
0.972
ENSSHAG00000009458
Sarcophilus harrisii
ENSSHAG00000009458
I
0.972
ENSFALG00000009019
Ficedula albicollis
ENSFALG00000009019
I
0.969
CUX2
Monodelphis domestica
ENSMODG00000012254
I
0.969
Pvit_05599
Pogona vitticeps
Pvit_05599
I
0.962
CUX2
Ornithorhynchus anatinus
ENSOANG00000004793
I
0.962
Aan_R010335
Calypte anna
Aan_R010335
I
0.958
CUX2
Anolis carolinensis
ENSACAG00000002281
I
0.955
CUX2
Taeniopygia guttata
ENSTGUG00000006470
I
0.950
Ogr05872
Ophisaurus gracilis
Ogr05872
I
0.948
ENSLOCG00000007417
Lepisosteus oculatus
ENSLOCG00000007417
I
0.947
cux2
Xenopus tropicalis
XB-GENE-487236
I
0.944
ENSLACG00000014413
Latimeria chalumnae
ENSLACG00000014413
I
0.938
ENSAPLG00000004382
Anas platyrhynchos
ENSAPLG00000004382
I
0.934
cux2b
Danio rerio
ENSDARG00000086345
I
0.931
ENSXMAG00000004131
Xiphophorus maculatus
ENSXMAG00000004131
I
0.927
ENSAMXG00000006105
Astyanax mexicanus
ENSAMXG00000006105
I
0.923
ENSGMOG00000017485
Gadus morhua
ENSGMOG00000017485
I
0.920
ENSPFOG00000005210
Poecilia formosa
ENSPFOG00000005210
I
0.920
cux2b
Oryzias latipes
ENSORLG00000015973
I
0.917
cux2b
Takifugu rubripes
ENSTRUG00000015853
I
0.916
ENSONIG00000015972
Oreochromis niloticus
ENSONIG00000015972
I
0.914
cux2b
Tetraodon nigroviridis
ENSTNIG00000011453
I
0.910
cux2b
Gasterosteus aculeatus
ENSGACG00000013522
I
0.910
ENSOGAG00000009038
Otolemur garnettii
ENSOGAG00000009038
I
0.885
Pvit_01819
Pogona vitticeps
Pvit_01819
I
0.885
CUX1
Erinaceus europaeus
ENSEEUG00000005128
I
0.882
ENSSHAG00000007801
Sarcophilus harrisii
ENSSHAG00000007801
I
0.881
CUX1
Monodelphis domestica
ENSMODG00000013581
I
0.881
CUX1
Pteropus vampyrus
ENSPVAG00000017756
I
0.880
CUX1
Tursiops truncatus
ENSTTRG00000014625
I
0.879
CUX1
Meleagris gallopavo
ENSMGAG00000003398
I
0.879
ENSP00000353401
Macaca fascicularis
ENSP00000353401
I
0.878
CUX1
Macaca mulatta
ENSMMUG00000021461
I
0.878
ENSCSAG00000018062
Chlorocebus sabaeus
ENSCSAG00000018062
I
0.878
Cux1
Mus musculus
ENSMUSG00000029705
D
0.878
ENSP00000353401-D1
Bos grunniens
ENSP00000353401-D1
I
0.878
CUX1
Callithrix jacchus
ENSCJAG00000016076
I
0.878
CUX1
Anolis carolinensis
ENSACAG00000015088
I
0.878
ENSNLEG00000008310
Nomascus leucogenys
ENSNLEG00000008310
I
0.878
CUX1
Canis familiaris
ENSCAFG00000013749
D
0.878
Cux1
Rattus norvegicus
ENSRNOG00000001424
I
0.878
CUX1
Myotis lucifugus
ENSMLUG00000007264
I
0.878
CUX1
Homo sapiens
ENSG00000257923
D
0.878
CUX1
Pan troglodytes
ENSPTRG00000019531
I
0.878
CUX1
Bos taurus
ENSBTAG00000010659
I
0.878
ENSPANG00000016879
Papio anubis
ENSPANG00000016879
I
0.878
CUX1
Microcebus murinus
ENSMICG00000010274
I
0.877
Ogr05066
Ophisaurus gracilis
Ogr05066
I
0.875
ENSAPLG00000002588
Anas platyrhynchos
ENSAPLG00000002588
I
0.875
ENSGALG00000001807
Gallus gallus
ENSGALG00000001807
I
0.875
Gfo_R011360
Geospiza fortis
Gfo_R011360
I
0.875
ENSFALG00000009409
Ficedula albicollis
ENSFALG00000009409
I
0.875
Alligator_sinensis_CCG004936.1
Alligator sinensis
Alligator_sinensis_CCG004936.1
I
0.875
CUX1
Taeniopygia guttata
ENSTGUG00000004386
I
0.875
Aan_R003487
Calypte anna
Aan_R003487
I
0.875
Afo_R009437
Aptenodytes forsteri
Afo_R009437
I
0.875
Tal_R013483
Tyto alba
Tal_R013483
I
0.873
ENSPSIG00000008210
Pelodiscus sinensis
ENSPSIG00000008210
I
0.872
ENSLACG00000017710
Latimeria chalumnae
ENSLACG00000017710
I
0.872
ENSLOCG00000001531
Lepisosteus oculatus
ENSLOCG00000001531
I
0.872
Cmyd_10006308
Chelonia mydas
Cmyd_10006308
I
0.872
XP_002942311
Xenopus tropicalis
XP_002942311
I
0.872
ENSSTOG00000010390
Ictidomys tridecemlineatus
ENSSTOG00000010390
I
0.868
CUX1
Felis catus
ENSFCAG00000008074
I
0.865
CUX1
Loxodonta africana
ENSLAFG00000002555
I
0.865
ENSAMEG00000015392
Ailuropoda melanoleuca
ENSAMEG00000015392
I
0.865
ENSOARG00000014629
Ovis aries
ENSOARG00000014629
I
0.865
cux1a
Danio rerio
ENSDARG00000078459
I
0.864
Myotis_brandtii_CUX1_10015212
Myotis brandtii
Myotis_brandtii_CUX1_10015212
I
0.861
CUX1
Ochotona princeps
ENSOPRG00000000165
I
0.858
CUX2
Pan troglodytes
ENSPTRG00000005455
I
0.847
ENSAMXG00000008817
Astyanax mexicanus
ENSAMXG00000008817
I
0.837
ENSGMOG00000008990
Gadus morhua
ENSGMOG00000008990
I
0.779
ENSMEUG00000004239
Macropus eugenii
ENSMEUG00000004239
I
0.771
ENSONIG00000003797
Oreochromis niloticus
ENSONIG00000003797
I
0.766
ENSTNIG00000007722
Tetraodon nigroviridis
ENSTNIG00000007722
I
0.766
ENSXMAG00000018520
Xiphophorus maculatus
ENSXMAG00000018520
I
0.756
CUX1
Takifugu rubripes
ENSTRUG00000008546
I
0.754
ENSMEUG00000013552
Macropus eugenii
ENSMEUG00000013552
I
0.719
ENSPANG00000011477
Papio anubis
ENSPANG00000011477
I
0.712
CUX2
Gorilla gorilla
ENSGGOG00000012173
I
0.712