cux2b (Oryzias latipes)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		ENSORLG00000015973 T167206_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.924 0.924
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.924 0.924
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.924 0.924
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.924 0.924
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.917 0.917
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.868 0.868
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.868 0.868
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.868 0.868
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.868 0.868
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.868 0.868
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.868 0.868
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.868 0.868
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.868 0.868
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.868 0.868
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.868 0.868
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.868 0.868
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.868 0.868
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.868 0.868
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.868 0.868
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000019992 CUT 489 566
ENSORLP00000019992 CUT 855 931
ENSORLP00000019992 CUT 1020 1098
ENSORLP00000019992 Homeodomain 1147 1203

Links

Other CUT,Homeodomain family TFs
Other Oryzias latipes TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.990
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.979
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.976
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.976
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.972
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.972
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.965
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.961
cux2b Danio rerio ENSDARG00000086345 I 0.958
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.958
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.937
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.934
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.931
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.931
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.931
CUX2 Homo sapiens ENSG00000111249 D 0.927
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.927
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.927
CUX2 Bos taurus ENSBTAG00000008571 I 0.927
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.927
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.927
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.927
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.927
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.927
CUX2 Sus scrofa ENSSSCG00000009831 I 0.927
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.927
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.927
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.924
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.924
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.924
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.924
CUX2 Felis catus ENSFCAG00000003176 I 0.924
CUX2 Gallus gallus ENSGALG00000004598 I 0.924
CUX2 Canis familiaris ENSCAFG00000008575 I 0.924
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.923
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.923
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.923
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.922
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.920
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.917
Cux2 Mus musculus ENSMUSG00000042589 D 0.917
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.917
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.917
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.916
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.913
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.913
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.913
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.907
Aan_R010335 Calypte anna Aan_R010335 I 0.906
cux2 Xenopus tropicalis XB-GENE-487236 I 0.906
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.896
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.892
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.881
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.874
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.874
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.874
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.874
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.872
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.871
XP_002942311 Xenopus tropicalis XP_002942311 I 0.869
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.868
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.868
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.868
Aan_R003487 Calypte anna Aan_R003487 I 0.868
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.868
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.868
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.868
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.868
CUX1 Homo sapiens ENSG00000257923 D 0.868
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.868
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.868
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.868
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.868
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.868
CUX1 Bos taurus ENSBTAG00000010659 I 0.868
CUX1 Canis familiaris ENSCAFG00000013749 D 0.868
CUX1 Microcebus murinus ENSMICG00000010274 I 0.868
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.868
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.868
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.868
Cux1 Mus musculus ENSMUSG00000029705 D 0.868
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.868
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.868
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.868
Tal_R013483 Tyto alba Tal_R013483 I 0.866
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.865
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.865
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.865
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.865
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.858
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.854
CUX1 Felis catus ENSFCAG00000008074 I 0.854
cux1a Danio rerio ENSDARG00000078459 I 0.854
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.854
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.854
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.851
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.851
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.847
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.833
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.792
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.782
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.777
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.767
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.767
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.748
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.705
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.705