cux2b (Danio rerio)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSDARG00000086345 T167018_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT

ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.941 0.941
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA

TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.941 0.941
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN

NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.941 0.941
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB

VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.941 0.941
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD

HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.937 0.937
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT

ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.881 0.881
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT

ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.881 0.881
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN

NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.881 0.881
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN

NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.881 0.881
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.881 0.881
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
0.881 0.881
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT

ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.881 0.881
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH

DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.881 0.881
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN

NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.881 0.881
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG

CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.881 0.881
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB

VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.881 0.881
CUX1
M10427_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.881 0.881
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW

WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
0.881 0.881
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR

YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.881 0.881
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000118737 CUT 451 528
ENSDARP00000118737 CUT 806 881
ENSDARP00000118737 CUT 966 1043
ENSDARP00000118737 Homeodomain 1093 1149
ENSDARP00000120983 CUT 329 406
ENSDARP00000120983 CUT 683 758
ENSDARP00000120983 CUT 843 920
ENSDARP00000120983 Homeodomain 970 1026

Links

Other CUT,Homeodomain family TFs
Other Danio rerio TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.976
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.968
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.965
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.962
cux2b Oryzias latipes ENSORLG00000015973 I 0.958
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.955
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.952
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.951
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.944
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.944
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.941
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.941
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.941
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.941
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.937
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.937
CUX2 Homo sapiens ENSG00000111249 D 0.937
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.937
CUX2 Sus scrofa ENSSSCG00000009831 I 0.937
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.937
CUX2 Bos taurus ENSBTAG00000008571 I 0.937
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.937
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.937
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.937
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.937
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.934
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.934
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.934
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.934
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.934
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.934
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.934
CUX2 Gallus gallus ENSGALG00000004598 I 0.934
Cux2 Mus musculus ENSMUSG00000042589 D 0.931
CUX2 Canis familiaris ENSCAFG00000008575 I 0.931
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.931
CUX2 Felis catus ENSFCAG00000003176 I 0.931
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.930
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.929
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.927
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.927
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.927
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.927
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.927
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.924
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.924
Aan_R010335 Calypte anna Aan_R010335 I 0.920
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.920
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.920
cux2 Xenopus tropicalis XB-GENE-487236 I 0.913
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.904
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.902
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.888
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.881
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.881
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.881
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.878
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.878
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.878
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.878
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.878
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.878
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.878
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.878
Aan_R003487 Calypte anna Aan_R003487 I 0.878
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.878
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.878
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.878
CUX1 Microcebus murinus ENSMICG00000010274 I 0.877
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.876
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.876
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.875
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.875
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.875
CUX1 Bos taurus ENSBTAG00000010659 I 0.875
CUX1 Canis familiaris ENSCAFG00000013749 D 0.875
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.875
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.875
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.875
Cux1 Mus musculus ENSMUSG00000029705 D 0.875
XP_002942311 Xenopus tropicalis XP_002942311 I 0.875
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.875
CUX1 Homo sapiens ENSG00000257923 D 0.875
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.875
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.875
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.875
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.874
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.874
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.874
Tal_R013483 Tyto alba Tal_R013483 I 0.870
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.867
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.867
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.867
CUX1 Felis catus ENSFCAG00000008074 I 0.867
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.867
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.865
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.864
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.860
cux1a Danio rerio ENSDARG00000078459 I 0.857
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.850
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.811
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.771
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.771
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.770
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.770
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.761
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.756
fgenesh2_pg.scaffold_130000023 Branchiostoma floridae fgenesh2_pg.scaffold_130000023 N 0.703
fgenesh2_pg.scaffold_74000125 Branchiostoma floridae fgenesh2_pg.scaffold_74000125 N 0.703