cux2b (Takifugu rubripes)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSTRUG00000015853 T167300_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT

ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.923 0.923
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA

TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.923 0.923
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN

NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.923 0.923
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB

VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.923 0.923
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD

HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.884 0.884
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT

ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.829 0.829
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT

ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.829 0.829
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN

NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.868 0.868
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN

NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.868 0.868
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.868 0.868
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
0.868 0.868
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT

ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.868 0.868
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH

DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.829 0.829
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN

NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.829 0.829
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG

CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.829 0.829
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB

VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.868 0.868
CUX1
M10427_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.868 0.868
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW

WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
0.868 0.868
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR

YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.868 0.868
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000040515 CUT 543 620
ENSTRUP00000040515 CUT 927 1002
ENSTRUP00000040515 CUT 1117 1195
ENSTRUP00000040515 Homeodomain 1243 1299
ENSTRUP00000040516 CUT 543 620
ENSTRUP00000040516 CUT 923 998
ENSTRUP00000040516 CUT 1113 1191
ENSTRUP00000040516 Homeodomain 1239 1295
ENSTRUP00000040517 CUT 442 519
ENSTRUP00000040517 CUT 701 747
ENSTRUP00000040517 CUT 838 916
ENSTRUP00000040517 Homeodomain 964 1020
ENSTRUP00000040518 CUT 484 561
ENSTRUP00000040518 CUT 854 929
ENSTRUP00000040518 CUT 1020 1098
ENSTRUP00000040518 Homeodomain 1146 1202

Links

Other CUT,Homeodomain family TFs
Other Takifugu rubripes TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.993
cux2b Oryzias latipes ENSORLG00000015973 I 0.972
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.972
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.969
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.969
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.969
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.958
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.941
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.941
cux2b Danio rerio ENSDARG00000086345 I 0.937
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.930
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.927
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.927
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.927
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.927
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.923
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.923
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.923
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.923
CUX2 Gallus gallus ENSGALG00000004598 I 0.923
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.923
CUX2 Homo sapiens ENSG00000111249 D 0.923
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.923
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.923
CUX2 Sus scrofa ENSSSCG00000009831 I 0.923
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.923
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.923
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.923
CUX2 Bos taurus ENSBTAG00000008571 I 0.923
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.923
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.920
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.920
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.920
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.920
CUX2 Felis catus ENSFCAG00000003176 I 0.920
CUX2 Canis familiaris ENSCAFG00000008575 I 0.920
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.918
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.916
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.916
Cux2 Mus musculus ENSMUSG00000042589 D 0.916
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.916
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.913
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.913
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.913
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.913
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.909
cux2 Xenopus tropicalis XB-GENE-487236 I 0.909
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.909
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.909
Aan_R010335 Calypte anna Aan_R010335 I 0.906
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.900
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.892
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.875
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.871
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.871
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.868
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.868
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.868
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.868
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.868
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.868
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.868
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.868
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.868
Aan_R003487 Calypte anna Aan_R003487 I 0.868
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.868
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.868
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.868
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.868
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.868
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.868
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.868
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.868
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.868
CUX1 Homo sapiens ENSG00000257923 D 0.868
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.868
CUX1 Bos taurus ENSBTAG00000010659 I 0.865
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.865
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.865
CUX1 Canis familiaris ENSCAFG00000013749 D 0.865
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.865
Cux1 Mus musculus ENSMUSG00000029705 D 0.865
XP_002942311 Xenopus tropicalis XP_002942311 I 0.864
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.864
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.864
CUX1 Microcebus murinus ENSMICG00000010274 I 0.864
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.857
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.854
Tal_R013483 Tyto alba Tal_R013483 I 0.854
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.854
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.854
CUX1 Felis catus ENSFCAG00000008074 I 0.854
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.850
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.850
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.850
cux1a Danio rerio ENSDARG00000078459 I 0.850
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.847
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.847
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.822
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.791
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.787
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.771
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.771
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.771
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.770
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.752