CUX1 (Ochotona princeps)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		ENSOPRG00000000165 T167197_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.996 0.996
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.996 0.996
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.996 0.996
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.996 0.996
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.996 0.996
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.996 0.996
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.996 0.996
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.996 0.996
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.996 0.996
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.996 0.996
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.996 0.996
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.996 0.996
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.996 0.996
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.996 0.996
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.886 0.886
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.886 0.886
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.886 0.886
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.886 0.886
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.879 0.879
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000000150 CUT 556 633
ENSOPRP00000000150 CUT 938 1014
ENSOPRP00000000150 CUT 1121 1198
ENSOPRP00000000150 Homeodomain 1243 1294

Links

Other CUT,Homeodomain family TFs
Other Ochotona princeps TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.996
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.996
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.996
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.996
CUX1 Felis catus ENSFCAG00000008074 I 0.996
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.996
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.996
Aan_R003487 Calypte anna Aan_R003487 I 0.986
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.986
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.986
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.986
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.986
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.986
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.986
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.986
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.986
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.982
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.982
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.982
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.979
Tal_R013483 Tyto alba Tal_R013483 I 0.975
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.972
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.972
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.972
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.972
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.972
Cux1 Mus musculus ENSMUSG00000029705 D 0.972
CUX1 Homo sapiens ENSG00000257923 D 0.972
CUX1 Canis familiaris ENSCAFG00000013749 D 0.972
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.972
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.972
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.972
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.972
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.972
CUX1 Bos taurus ENSBTAG00000010659 I 0.972
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.972
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.972
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.971
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.969
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.969
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.969
CUX1 Microcebus murinus ENSMICG00000010274 I 0.967
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.965
XP_002942311 Xenopus tropicalis XP_002942311 I 0.955
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.938
cux1a Danio rerio ENSDARG00000078459 I 0.916
Aan_R010335 Calypte anna Aan_R010335 I 0.886
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.886
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.886
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.883
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.883
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.877
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.875
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.871
CUX2 Sus scrofa ENSSSCG00000009831 I 0.868
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.868
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.868
CUX2 Homo sapiens ENSG00000111249 D 0.868
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.868
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.868
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.868
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.868
CUX2 Bos taurus ENSBTAG00000008571 I 0.868
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.865
CUX2 Canis familiaris ENSCAFG00000008575 I 0.865
CUX2 Felis catus ENSFCAG00000003176 I 0.865
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.865
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.864
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.864
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.864
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.864
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.864
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.864
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.864
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.864
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.862
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.862
CUX2 Gallus gallus ENSGALG00000004598 I 0.861
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.861
cux2 Xenopus tropicalis XB-GENE-487236 I 0.861
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.861
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.861
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.861
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.861
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.861
cux2b Danio rerio ENSDARG00000086345 I 0.860
Cux2 Mus musculus ENSMUSG00000042589 D 0.858
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.858
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.858
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.858
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.855
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.854
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.854
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.851
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.848
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.847
cux2b Oryzias latipes ENSORLG00000015973 I 0.847
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.844
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.843
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.842
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.840
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.833
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.832
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.819
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.816
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.805
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.803
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.754
CUX1 Procavia capensis ENSPCAG00000004482 I 0.746
ENSGGOG00000016960 Gorilla gorilla ENSGGOG00000016960 I 0.722