cux2 (Xenopus tropicalis)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		XB-GENE-487236 T167474_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.944 0.944
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.941 0.941
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.941 0.941
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.941 0.941
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.941 0.941
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.865 0.865
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.865 0.865
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.861 0.861
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.861 0.861
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.861 0.861
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.861 0.861
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.861 0.861
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.861 0.861
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.861 0.861
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.861 0.861
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.861 0.861
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.861 0.861
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.861 0.861
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.861 0.861
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI68490 CUT 491 569
AAI68490 CUT 837 912
AAI68490 CUT 987 1065
AAI68490 Homeodomain 1113 1169

Links

Other CUT,Homeodomain family TFs
Other Xenopus tropicalis TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.962
CUX2 Gallus gallus ENSGALG00000004598 I 0.962
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.962
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.962
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.962
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.962
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.962
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.958
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.958
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.957
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.955
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.948
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.948
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.948
CUX2 Felis catus ENSFCAG00000003176 I 0.948
CUX2 Canis familiaris ENSCAFG00000008575 I 0.948
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.944
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.944
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.944
CUX2 Sus scrofa ENSSSCG00000009831 I 0.944
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.944
CUX2 Homo sapiens ENSG00000111249 D 0.944
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.944
Cux2 Mus musculus ENSMUSG00000042589 D 0.944
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.944
CUX2 Bos taurus ENSBTAG00000008571 I 0.944
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.943
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.941
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.941
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.941
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.941
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.941
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.941
Aan_R010335 Calypte anna Aan_R010335 I 0.941
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.938
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.938
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.934
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.934
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.934
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.931
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.927
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.926
cux2b Danio rerio ENSDARG00000086345 I 0.913
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.913
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.910
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.910
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.909
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.906
cux2b Oryzias latipes ENSORLG00000015973 I 0.906
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.903
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.903
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.902
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.874
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.874
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.871
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.867
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.867
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.865
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.865
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.865
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.865
Cux1 Mus musculus ENSMUSG00000029705 D 0.865
CUX1 Canis familiaris ENSCAFG00000013749 D 0.865
CUX1 Bos taurus ENSBTAG00000010659 I 0.865
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.864
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.864
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.864
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.862
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.861
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.861
Aan_R003487 Calypte anna Aan_R003487 I 0.861
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.861
cux1a Danio rerio ENSDARG00000078459 I 0.861
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.861
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.861
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.861
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.861
CUX1 Homo sapiens ENSG00000257923 D 0.861
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.861
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.861
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.861
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.861
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.861
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.861
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.861
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.861
Tal_R013483 Tyto alba Tal_R013483 I 0.859
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.858
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.858
XP_002942311 Xenopus tropicalis XP_002942311 I 0.858
CUX1 Microcebus murinus ENSMICG00000010274 I 0.856
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.854
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.852
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.851
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.851
CUX1 Felis catus ENSFCAG00000008074 I 0.851
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.851
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.851
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.850
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.820
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.809
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.782
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.779
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.774
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.774
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.761
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.759
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.758
ENSMEUG00000013552 Macropus eugenii ENSMEUG00000013552 I 0.712
ENSPSIG00000003536 Pelodiscus sinensis ENSPSIG00000003536 I 0.701