Cux1 (Rattus norvegicus)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSRNOG00000001424 T167252_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
mouse homolog acts as a transcriptional repressor; plays a role in lung epithelial cell differentiation and hair follicle morphogenesis [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
1.000 1.000
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW

WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
1.000 1.000
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT

ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.993 0.993
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT

ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.993 0.993
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN

NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.993 0.993
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN

NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.993 0.993
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.993 0.993
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT

ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.993 0.993
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH

DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.993 0.993
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN

NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.993 0.993
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG

CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.993 0.993
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB

VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.993 0.993
CUX1
M10427_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.993 0.993
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR

YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.993 0.993
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT

ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.885 0.885
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA

TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.885 0.885
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN

NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.885 0.885
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB

VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.885 0.885
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD

HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.878 0.878
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000056243 CUT 556 633
ENSRNOP00000056243 CUT 923 999
ENSRNOP00000056243 CUT 1106 1184
ENSRNOP00000056243 Homeodomain 1229 1285

Links

Other CUT,Homeodomain family TFs
Other Rattus norvegicus TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CUX1 Canis familiaris ENSCAFG00000013749 D 1.000
Cux1 Mus musculus ENSMUSG00000029705 D 1.000
CUX1 Bos taurus ENSBTAG00000010659 I 1.000
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 1.000
CUX1 Myotis lucifugus ENSMLUG00000007264 I 1.000
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.993
CUX1 Homo sapiens ENSG00000257923 D 0.993
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.993
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.993
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.993
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.993
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.993
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.993
CUX1 Microcebus murinus ENSMICG00000010274 I 0.992
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.990
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.990
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.990
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.990
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.990
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.990
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.990
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.990
Aan_R003487 Calypte anna Aan_R003487 I 0.990
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.990
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.990
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.986
XP_002942311 Xenopus tropicalis XP_002942311 I 0.986
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.986
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.986
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.986
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.986
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.983
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.983
CUX1 Felis catus ENSFCAG00000008074 I 0.983
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.983
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.979
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.979
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.979
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.976
Tal_R013483 Tyto alba Tal_R013483 I 0.972
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.972
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.969
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.965
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.962
cux1a Danio rerio ENSDARG00000078459 I 0.937
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.910
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.890
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.889
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.889
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.885
CUX2 Sus scrofa ENSSSCG00000009831 I 0.885
CUX2 Bos taurus ENSBTAG00000008571 I 0.885
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.885
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.885
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.885
CUX2 Canis familiaris ENSCAFG00000008575 I 0.885
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.885
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.885
CUX2 Felis catus ENSFCAG00000003176 I 0.885
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.885
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.885
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.885
CUX2 Homo sapiens ENSG00000111249 D 0.885
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.885
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.882
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.882
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.882
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.882
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.882
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.882
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.882
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.882
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.882
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.882
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.882
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.878
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.878
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.878
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.878
Cux2 Mus musculus ENSMUSG00000042589 D 0.878
CUX2 Gallus gallus ENSGALG00000004598 I 0.878
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.878
cux2b Danio rerio ENSDARG00000086345 I 0.875
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.875
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.875
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.875
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.872
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.872
Aan_R010335 Calypte anna Aan_R010335 I 0.872
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.868
cux2b Oryzias latipes ENSORLG00000015973 I 0.868
cux2 Xenopus tropicalis XB-GENE-487236 I 0.865
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.865
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.865
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.861
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.861
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.861
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.858
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.851
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.842
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.809
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.778
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.764
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.764
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.760
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.757
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.757
ENSGGOG00000016960 Gorilla gorilla ENSGGOG00000016960 I 0.729
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.726