CUX1 (Microcebus murinus)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		ENSMICG00000010274 T167127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		1.000 1.000
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		1.000 1.000
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		1.000 1.000
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		1.000 1.000
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		1.000 1.000
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		1.000 1.000
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		1.000 1.000
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		1.000 1.000
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		1.000 1.000
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		1.000 1.000
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		1.000 1.000
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.992 0.992
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.992 0.992
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.885 0.885
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.885 0.885
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.885 0.885
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.885 0.885
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.877 0.877
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000009363 CUT 536 613
ENSMICP00000009363 CUT 923 957
ENSMICP00000009363 CUT 1106 1184
ENSMICP00000009363 Homeodomain 1229 1285

Links

Other CUT,Homeodomain family TFs
Other Microcebus murinus TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 1.000
CUX1 Macaca mulatta ENSMMUG00000021461 I 1.000
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 1.000
CUX1 Pan troglodytes ENSPTRG00000019531 I 1.000
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 1.000
CUX1 Homo sapiens ENSG00000257923 D 1.000
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 1.000
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.996
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.996
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.996
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.992
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.992
Aan_R003487 Calypte anna Aan_R003487 I 0.992
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.992
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.992
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.992
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.992
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.992
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.992
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.992
Cux1 Mus musculus ENSMUSG00000029705 D 0.992
CUX1 Bos taurus ENSBTAG00000010659 I 0.992
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.992
CUX1 Canis familiaris ENSCAFG00000013749 D 0.992
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.992
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.988
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.988
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.988
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.988
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.984
XP_002942311 Xenopus tropicalis XP_002942311 I 0.979
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.979
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.975
CUX1 Felis catus ENSFCAG00000008074 I 0.971
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.971
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.971
Tal_R013483 Tyto alba Tal_R013483 I 0.971
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.971
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.971
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.967
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.967
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.967
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.963
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.959
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.918
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.889
CUX2 Felis catus ENSFCAG00000003176 I 0.889
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.889
CUX2 Canis familiaris ENSCAFG00000008575 I 0.889
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.889
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.885
CUX2 Sus scrofa ENSSSCG00000009831 I 0.885
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.885
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.885
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.885
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.885
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.885
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.885
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.885
CUX2 Homo sapiens ENSG00000111249 D 0.885
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.885
CUX2 Bos taurus ENSBTAG00000008571 I 0.885
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.885
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.885
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.885
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.885
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.885
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.881
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.881
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.881
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.881
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.881
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.881
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.881
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.881
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.881
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.881
CUX2 Gallus gallus ENSGALG00000004598 I 0.877
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.877
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.877
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.877
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.877
cux2b Danio rerio ENSDARG00000086345 I 0.877
Cux2 Mus musculus ENSMUSG00000042589 D 0.877
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.872
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.872
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.868
cux2b Oryzias latipes ENSORLG00000015973 I 0.868
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.868
Aan_R010335 Calypte anna Aan_R010335 I 0.868
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.868
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.864
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.864
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.860
cux2 Xenopus tropicalis XB-GENE-487236 I 0.856
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.856
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.844
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.819
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.819
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.815
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.811
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.811
cux1a Danio rerio ENSDARG00000078459 I 0.794
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.765
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.761
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.751
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.748