CUX1 (Takifugu rubripes)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		ENSTRUG00000008546 T167297_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.826 0.826
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.826 0.826
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.826 0.826
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.826 0.826
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.826 0.826
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.807 0.807
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.807 0.807
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.807 0.807
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.826 0.826
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.826 0.826
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.826 0.826
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.826 0.826
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.826 0.826
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.807 0.807
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.741 0.741
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.741 0.741
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.758 0.758
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.758 0.758
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.754 0.754
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000021409 CUT 466 543
ENSTRUP00000021409 CUT 803 864
ENSTRUP00000021409 CUT 966 1044
ENSTRUP00000021409 Homeodomain 1092 1148
ENSTRUP00000021410 CUT 540 617
ENSTRUP00000021410 CUT 877 938
ENSTRUP00000021410 CUT 1040 1118
ENSTRUP00000021410 Homeodomain 1166 1222
ENSTRUP00000021411 CUT 570 647
ENSTRUP00000021411 CUT 907 968
ENSTRUP00000021411 CUT 1070 1148
ENSTRUP00000021411 Homeodomain 1196 1252
ENSTRUP00000021412 CUT 36 113
ENSTRUP00000021412 CUT 213 291
ENSTRUP00000021412 Homeodomain 339 395
ENSTRUP00000021413 CUT 538 615
ENSTRUP00000021413 CUT 842 905
ENSTRUP00000021413 CUT 988 1066
ENSTRUP00000021413 Homeodomain 1114 1170

Links

Other CUT,Homeodomain family TFs
Other Takifugu rubripes TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPFOG00000024261 Poecilia formosa ENSPFOG00000024261 N 0.991
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.932
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.908
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.898
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.891
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.879
CUX2 Procavia capensis ENSPCAG00000003973 N 0.858
CUX2 Macaca mulatta ENSMMUG00000001909 N 0.854
ENSPPYG00000004959 Pongo abelii ENSPPYG00000004959 N 0.854
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.841
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.830
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.830
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.826
Aan_R003487 Calypte anna Aan_R003487 I 0.826
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.826
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.826
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.826
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.826
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.826
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.826
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.826
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.826
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.822
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.822
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.822
CUX1 Microcebus murinus ENSMICG00000010274 I 0.815
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.811
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.811
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.807
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.807
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.807
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.807
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.807
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.807
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.807
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.807
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.807
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.807
CUX1 Felis catus ENSFCAG00000008074 I 0.807
CUX1 Homo sapiens ENSG00000257923 D 0.807
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.803
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.803
ENSGGOG00000016960 Gorilla gorilla ENSGGOG00000016960 I 0.801
Cux1 Dipodomys ordii ENSDORG00000005924 N 0.800
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.793
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.781
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.777
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.773
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.771
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.769
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.769
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.765
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.765
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.765
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.762
cux2b Danio rerio ENSDARG00000086345 I 0.761
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.761
cux2 Xenopus tropicalis XB-GENE-487236 I 0.761
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.758
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.758
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.758
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.758
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.757
CUX1 Canis familiaris ENSCAFG00000013749 D 0.757
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.757
CUX1 Bos taurus ENSBTAG00000010659 I 0.757
Cux1 Mus musculus ENSMUSG00000029705 D 0.757
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.757
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.756
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.755
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.754
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.754
Cux2 Mus musculus ENSMUSG00000042589 D 0.754
cux1a Danio rerio ENSDARG00000078459 I 0.753
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.752
XP_002942311 Xenopus tropicalis XP_002942311 I 0.751
CUX2 Gorilla gorilla ENSGGOG00000012173 I 0.751
ENSPANG00000011477 Papio anubis ENSPANG00000011477 I 0.751
Tal_R013483 Tyto alba Tal_R013483 I 0.750
Aan_R010335 Calypte anna Aan_R010335 I 0.750
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.748
cux2b Oryzias latipes ENSORLG00000015973 I 0.748
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.748
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.748
CUX2 Gallus gallus ENSGALG00000004598 I 0.748
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.744
CUX2 Felis catus ENSFCAG00000003176 I 0.744
CUX2 Canis familiaris ENSCAFG00000008575 I 0.744
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.741
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.741
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.741
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.741
CUX2 Bos taurus ENSBTAG00000008571 I 0.741
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.741
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.741
CUX2 Homo sapiens ENSG00000111249 D 0.741
CUX2 Sus scrofa ENSSSCG00000009831 I 0.741
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.741
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.741
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.741
ENSCSAG00000002603 Chlorocebus sabaeus ENSCSAG00000002603 N 0.738
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.737
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.735
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.733
CUX1 Echinops telfairi ENSETEG00000007201 N 0.710
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.709
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.706
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.705
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.704
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.702