CUX2 (Cavia porcellus)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		ENSCPOG00000020483 T167003_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.993 0.993
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.993 0.993
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.993 0.993
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.993 0.993
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.986 0.986
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.882 0.882
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.882 0.882
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.882 0.882
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.882 0.882
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.882 0.882
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.882 0.882
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.882 0.882
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.882 0.882
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.882 0.882
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.882 0.882
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.882 0.882
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.882 0.882
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.882 0.882
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.882 0.882
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015328 CUT 541 619
ENSCPOP00000015328 CUT 868 944
ENSCPOP00000015328 CUT 1019 1096
ENSCPOP00000015328 Homeodomain 1145 1201

Links

Other CUT,Homeodomain family TFs
Other Cavia porcellus TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.997
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.997
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.997
CUX2 Homo sapiens ENSG00000111249 D 0.997
CUX2 Sus scrofa ENSSSCG00000009831 I 0.997
CUX2 Bos taurus ENSBTAG00000008571 I 0.997
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.997
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.997
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.993
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.993
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.993
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.993
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.993
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.990
CUX2 Felis catus ENSFCAG00000003176 I 0.990
CUX2 Canis familiaris ENSCAFG00000008575 I 0.990
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.990
Cux2 Mus musculus ENSMUSG00000042589 D 0.986
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.986
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.983
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.983
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.983
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.979
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.979
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.979
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.976
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.976
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.976
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.976
CUX2 Gallus gallus ENSGALG00000004598 I 0.976
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.972
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.972
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.965
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.965
Aan_R010335 Calypte anna Aan_R010335 I 0.962
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.955
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.954
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.951
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.951
cux2 Xenopus tropicalis XB-GENE-487236 I 0.941
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.941
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.938
cux2b Danio rerio ENSDARG00000086345 I 0.934
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.934
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.927
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.927
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.927
cux2b Oryzias latipes ENSORLG00000015973 I 0.924
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.923
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.921
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.917
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.917
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.888
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.888
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.888
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.888
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.886
CUX1 Microcebus murinus ENSMICG00000010274 I 0.885
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.885
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.882
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.882
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.882
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.882
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.882
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.882
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.882
Aan_R003487 Calypte anna Aan_R003487 I 0.882
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.882
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.882
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.882
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.882
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.882
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.882
Cux1 Mus musculus ENSMUSG00000029705 D 0.882
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.882
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.882
CUX1 Homo sapiens ENSG00000257923 D 0.882
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.882
CUX1 Canis familiaris ENSCAFG00000013749 D 0.882
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.882
CUX1 Bos taurus ENSBTAG00000010659 I 0.882
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.881
Tal_R013483 Tyto alba Tal_R013483 I 0.880
XP_002942311 Xenopus tropicalis XP_002942311 I 0.879
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.878
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.878
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.878
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.878
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.872
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.872
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.868
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.868
CUX1 Felis catus ENSFCAG00000008074 I 0.868
cux1a Danio rerio ENSDARG00000078459 I 0.868
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.868
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.865
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.865
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.861
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.854
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.837
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.779
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.774
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.770
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.759
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.741
CUX2 Gorilla gorilla ENSGGOG00000012173 I 0.722
ENSPANG00000011477 Papio anubis ENSPANG00000011477 I 0.722
ENSMEUG00000013552 Macropus eugenii ENSMEUG00000013552 I 0.719
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.712
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.712
ENSPSIG00000003536 Pelodiscus sinensis ENSPSIG00000003536 I 0.701