ENSXMAG00000018520 (Xiphophorus maculatus)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		ENSXMAG00000018520 T167322_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.827 0.827
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.827 0.827
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.827 0.827
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.827 0.827
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.827 0.827
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.827 0.827
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.827 0.827
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.827 0.827
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.827 0.827
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.827 0.827
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.827 0.827
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.827 0.827
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.827 0.827
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.827 0.827
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.759 0.759
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.759 0.759
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.759 0.759
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.759 0.759
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000018603 CUT 517 594
ENSXMAP00000018603 CUT 944 1001
ENSXMAP00000018603 CUT 1098 1177
ENSXMAP00000018603 Homeodomain 1223 1279

Links

Other CUT,Homeodomain family TFs
Other Xiphophorus maculatus TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.917
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.914
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.906
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.891
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.887
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.853
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.835
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.831
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.831
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.831
Aan_R003487 Calypte anna Aan_R003487 I 0.827
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.827
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.827
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.827
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.827
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.827
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.827
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.827
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.827
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.827
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.823
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.823
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.823
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.812
CUX1 Microcebus murinus ENSMICG00000010274 I 0.811
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.808
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.808
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.808
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.808
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.808
CUX1 Felis catus ENSFCAG00000008074 I 0.808
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.805
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.805
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.801
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.778
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.776
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.771
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.771
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.769
cux2b Oryzias latipes ENSORLG00000015973 I 0.767
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.767
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.767
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.767
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.767
cux1a Danio rerio ENSDARG00000078459 I 0.767
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.767
CUX1 Homo sapiens ENSG00000257923 D 0.764
CUX1 Canis familiaris ENSCAFG00000013749 D 0.764
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.764
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.764
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.764
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.764
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.764
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.764
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.764
Cux1 Mus musculus ENSMUSG00000029705 D 0.764
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.764
CUX1 Bos taurus ENSBTAG00000010659 I 0.764
CUX2 Canis familiaris ENSCAFG00000008575 I 0.763
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.763
CUX2 Gallus gallus ENSGALG00000004598 I 0.763
CUX2 Felis catus ENSFCAG00000003176 I 0.763
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.763
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.763
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.763
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.763
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.759
cux2 Xenopus tropicalis XB-GENE-487236 I 0.759
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.759
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.759
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.759
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.759
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.759
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.759
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.759
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.759
CUX2 Bos taurus ENSBTAG00000008571 I 0.759
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.759
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.759
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.759
CUX2 Sus scrofa ENSSSCG00000009831 I 0.759
CUX2 Homo sapiens ENSG00000111249 D 0.759
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.759
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.759
XP_002942311 Xenopus tropicalis XP_002942311 I 0.758
Tal_R013483 Tyto alba Tal_R013483 I 0.757
Cux2 Mus musculus ENSMUSG00000042589 D 0.756
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.756
cux2b Danio rerio ENSDARG00000086345 I 0.756
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.756
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.756
Aan_R010335 Calypte anna Aan_R010335 I 0.752
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.752
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.748
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.733
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.716
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.710
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.709
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.708
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.705
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.704
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.701
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.700
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.700