Gfo_R003142 (Geospiza fortis)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		Gfo_R003142 T167428_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.979 0.979
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.979 0.979
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.979 0.979
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.979 0.979
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.975 0.975
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.890 0.890
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.890 0.890
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.890 0.890
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.890 0.890
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.890 0.890
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.890 0.890
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.890 0.890
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.890 0.890
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.890 0.890
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.890 0.890
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.890 0.890
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.890 0.890
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.890 0.890
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.890 0.890
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R003142 CUT 320 398
Gfo_R003142 CUT 582 657
Gfo_R003142 CUT 733 810
Gfo_R003142 Homeodomain 859 910

Links

Other CUT,Homeodomain family TFs
Other Geospiza fortis TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.996
Aan_R010335 Calypte anna Aan_R010335 I 0.996
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.993
CUX2 Gallus gallus ENSGALG00000004598 I 0.989
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.989
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.989
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.989
CUX2 Felis catus ENSFCAG00000003176 I 0.986
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.986
CUX2 Canis familiaris ENSCAFG00000008575 I 0.986
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.982
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.982
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.982
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.979
CUX2 Homo sapiens ENSG00000111249 D 0.979
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.979
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.979
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.979
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.979
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.979
CUX2 Bos taurus ENSBTAG00000008571 I 0.979
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.979
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.979
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.979
CUX2 Sus scrofa ENSSSCG00000009831 I 0.979
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.979
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.975
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.975
Cux2 Mus musculus ENSMUSG00000042589 D 0.975
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.975
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.972
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.972
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.968
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.968
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.968
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.968
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.965
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.965
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.957
cux2 Xenopus tropicalis XB-GENE-487236 I 0.957
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.943
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.933
cux2b Danio rerio ENSDARG00000086345 I 0.929
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.929
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.926
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.926
cux2b Oryzias latipes ENSORLG00000015973 I 0.922
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.918
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.918
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.915
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.915
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.897
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.894
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.890
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.890
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.890
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.890
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.890
CUX1 Bos taurus ENSBTAG00000010659 I 0.890
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.890
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.890
CUX1 Canis familiaris ENSCAFG00000013749 D 0.890
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.890
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.890
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.890
Cux1 Mus musculus ENSMUSG00000029705 D 0.890
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.890
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.890
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.890
CUX1 Homo sapiens ENSG00000257923 D 0.890
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.890
CUX1 Felis catus ENSFCAG00000008074 I 0.890
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.887
Aan_R003487 Calypte anna Aan_R003487 I 0.887
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.887
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.887
Tal_R013483 Tyto alba Tal_R013483 I 0.887
XP_002942311 Xenopus tropicalis XP_002942311 I 0.887
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.887
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.887
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.887
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.887
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.887
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.887
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.887
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.887
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.887
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.887
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.883
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.883
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.883
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.883
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.883
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.883
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.879
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.865
cux1a Danio rerio ENSDARG00000078459 I 0.857
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.848
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.844
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.762
CUX1 Microcebus murinus ENSMICG00000010274 I 0.748
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.731
ENSMEUG00000013552 Macropus eugenii ENSMEUG00000013552 I 0.727
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.720
ENSPSIG00000003536 Pelodiscus sinensis ENSPSIG00000003536 I 0.713
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.709
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.706
ENSPANG00000011477 Papio anubis ENSPANG00000011477 I 0.706
CUX2 Gorilla gorilla ENSGGOG00000012173 I 0.706
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.702
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.702