CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CUX1
(
Callithrix jacchus
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSCJAG00000016076
T166999_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.997
0.997
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.997
0.997
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN
NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.997
0.997
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN
NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.997
0.997
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.997
0.997
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT
ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.997
0.997
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.997
0.997
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN
NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.997
0.997
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.997
0.997
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB
VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.997
0.997
CUX1
M10427_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.997
0.997
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR
YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.997
0.997
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
0.990
0.990
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
0.990
0.990
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.885
0.885
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA
TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.885
0.885
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN
NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.885
0.885
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB
VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.885
0.885
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD
HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.878
0.878
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000029677
CUT
538
615
EGEDMDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALR
ENSCJAP00000029677
CUT
933
1009
MYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQGVL
ENSCJAP00000029677
CUT
1116
1194
MSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMD
ENSCJAP00000029677
Homeodomain
1239
1295
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEDLATQLNLKTSTVINWFHNYRSRIRR
ENSCJAP00000029680
CUT
558
635
EGEDMDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALR
ENSCJAP00000029680
CUT
953
1029
MYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQGVL
ENSCJAP00000029680
CUT
1136
1214
MSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMD
ENSCJAP00000029680
Homeodomain
1259
1315
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEDLATQLNLKTSTVINWFHNYRSRIRR
ENSCJAP00000029709
bZIP
109
148
GQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQAT
Links
Other
CUT,Homeodomain
family TFs
Other
Callithrix jacchus
TFs
110 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSOGAG00000009038
Otolemur garnettii
ENSOGAG00000009038
I
1.000
ENSPANG00000016879
Papio anubis
ENSPANG00000016879
I
0.997
ENSP00000353401
Macaca fascicularis
ENSP00000353401
I
0.997
ENSCSAG00000018062
Chlorocebus sabaeus
ENSCSAG00000018062
I
0.997
CUX1
Pan troglodytes
ENSPTRG00000019531
I
0.997
CUX1
Macaca mulatta
ENSMMUG00000021461
I
0.997
ENSNLEG00000008310
Nomascus leucogenys
ENSNLEG00000008310
I
0.997
CUX1
Homo sapiens
ENSG00000257923
D
0.997
CUX1
Microcebus murinus
ENSMICG00000010274
I
0.996
CUX1
Tursiops truncatus
ENSTTRG00000014625
I
0.993
Cux1
Rattus norvegicus
ENSRNOG00000001424
I
0.990
ENSP00000353401-D1
Bos grunniens
ENSP00000353401-D1
I
0.990
Pvit_01819
Pogona vitticeps
Pvit_01819
I
0.990
CUX1
Myotis lucifugus
ENSMLUG00000007264
I
0.990
CUX1
Anolis carolinensis
ENSACAG00000015088
I
0.990
CUX1
Canis familiaris
ENSCAFG00000013749
D
0.990
CUX1
Monodelphis domestica
ENSMODG00000013581
I
0.990
CUX1
Bos taurus
ENSBTAG00000010659
I
0.990
Cux1
Mus musculus
ENSMUSG00000029705
D
0.990
ENSSHAG00000007801
Sarcophilus harrisii
ENSSHAG00000007801
I
0.990
CUX1
Pteropus vampyrus
ENSPVAG00000017756
I
0.987
CUX1
Erinaceus europaeus
ENSEEUG00000005128
I
0.986
Ogr05066
Ophisaurus gracilis
Ogr05066
I
0.986
CUX1
Meleagris gallopavo
ENSMGAG00000003398
I
0.982
Gfo_R011360
Geospiza fortis
Gfo_R011360
I
0.979
ENSAPLG00000002588
Anas platyrhynchos
ENSAPLG00000002588
I
0.979
XP_002942311
Xenopus tropicalis
XP_002942311
I
0.979
Alligator_sinensis_CCG004936.1
Alligator sinensis
Alligator_sinensis_CCG004936.1
I
0.979
Afo_R009437
Aptenodytes forsteri
Afo_R009437
I
0.979
ENSGALG00000001807
Gallus gallus
ENSGALG00000001807
I
0.979
CUX1
Taeniopygia guttata
ENSTGUG00000004386
I
0.979
ENSFALG00000009409
Ficedula albicollis
ENSFALG00000009409
I
0.979
Aan_R003487
Calypte anna
Aan_R003487
I
0.979
ENSLACG00000017710
Latimeria chalumnae
ENSLACG00000017710
I
0.976
ENSPSIG00000008210
Pelodiscus sinensis
ENSPSIG00000008210
I
0.976
Cmyd_10006308
Chelonia mydas
Cmyd_10006308
I
0.976
ENSSTOG00000010390
Ictidomys tridecemlineatus
ENSSTOG00000010390
I
0.976
Tal_R013483
Tyto alba
Tal_R013483
I
0.975
ENSOARG00000014629
Ovis aries
ENSOARG00000014629
I
0.972
ENSLOCG00000001531
Lepisosteus oculatus
ENSLOCG00000001531
I
0.972
ENSAMEG00000015392
Ailuropoda melanoleuca
ENSAMEG00000015392
I
0.972
CUX1
Felis catus
ENSFCAG00000008074
I
0.972
CUX1
Loxodonta africana
ENSLAFG00000002555
I
0.972
CUX1
Ochotona princeps
ENSOPRG00000000165
I
0.969
Myotis_brandtii_CUX1_10015212
Myotis brandtii
Myotis_brandtii_CUX1_10015212
I
0.969
cux1a
Danio rerio
ENSDARG00000078459
I
0.934
ENSAMXG00000008817
Astyanax mexicanus
ENSAMXG00000008817
I
0.906
ENSLOCG00000007417
Lepisosteus oculatus
ENSLOCG00000007417
I
0.898
ENSAMXG00000006105
Astyanax mexicanus
ENSAMXG00000006105
I
0.892
Gfo_R003142
Geospiza fortis
Gfo_R003142
I
0.890
CUX2
Otolemur garnettii
ENSOGAG00000029919
I
0.888
ENSP00000261726
Macaca fascicularis
ENSP00000261726
I
0.888
ENSP00000261726-D1
Bos grunniens
ENSP00000261726-D1
I
0.888
CUX2
Sus scrofa
ENSSSCG00000009831
I
0.888
ENSNLEG00000000470
Nomascus leucogenys
ENSNLEG00000000470
I
0.888
CUX2
Oryctolagus cuniculus
ENSOCUG00000021923
I
0.888
CUX2
Homo sapiens
ENSG00000111249
D
0.888
CUX2
Bos taurus
ENSBTAG00000008571
I
0.888
CUX2
Callithrix jacchus
ENSCJAG00000011694
I
0.888
CUX2
Pteropus vampyrus
ENSPVAG00000013176
I
0.885
CUX2
Dasypus novemcinctus
ENSDNOG00000039959
I
0.885
ENSFALG00000009019
Ficedula albicollis
ENSFALG00000009019
I
0.885
CUX2
Felis catus
ENSFCAG00000003176
I
0.885
CUX2
Tursiops truncatus
ENSTTRG00000000945
I
0.885
CUX2
Canis familiaris
ENSCAFG00000008575
I
0.885
ENSMPUG00000002207
Mustela putorius furo
ENSMPUG00000002207
I
0.885
CUX2
Myotis lucifugus
ENSMLUG00000003239
I
0.885
ENSOARG00000017879
Ovis aries
ENSOARG00000017879
I
0.885
ENSSTOG00000002242
Ictidomys tridecemlineatus
ENSSTOG00000002242
I
0.885
Cmyd_10015658
Chelonia mydas
Cmyd_10015658
I
0.885
CUX2
Ochotona princeps
ENSOPRG00000006461
I
0.885
Alligator_sinensis_CCG016555.1
Alligator sinensis
Alligator_sinensis_CCG016555.1
I
0.885
ENSAMEG00000013799
Ailuropoda melanoleuca
ENSAMEG00000013799
I
0.882
Myotis_brandtii_CUX2_10011523
Myotis brandtii
Myotis_brandtii_CUX2_10011523
I
0.882
CUX2
Cavia porcellus
ENSCPOG00000020483
I
0.882
ENSSHAG00000009458
Sarcophilus harrisii
ENSSHAG00000009458
I
0.882
CUX2
Meleagris gallopavo
ENSMGAG00000005225
I
0.882
CUX2
Gallus gallus
ENSGALG00000004598
I
0.882
CUX2
Loxodonta africana
ENSLAFG00000001145
I
0.882
ENSLACG00000014413
Latimeria chalumnae
ENSLACG00000014413
I
0.882
cux2b
Danio rerio
ENSDARG00000086345
I
0.881
CUX2
Monodelphis domestica
ENSMODG00000012254
I
0.878
Cux2
Mus musculus
ENSMUSG00000042589
D
0.878
Pvit_05599
Pogona vitticeps
Pvit_05599
I
0.875
CUX2
Ornithorhynchus anatinus
ENSOANG00000004793
I
0.875
CUX2
Anolis carolinensis
ENSACAG00000002281
I
0.875
ENSPFOG00000005210
Poecilia formosa
ENSPFOG00000005210
I
0.875
ENSXMAG00000004131
Xiphophorus maculatus
ENSXMAG00000004131
I
0.875
Aan_R010335
Calypte anna
Aan_R010335
I
0.872
Cux2
Rattus norvegicus
ENSRNOG00000001259
I
0.869
cux2b
Takifugu rubripes
ENSTRUG00000015853
I
0.868
cux2b
Oryzias latipes
ENSORLG00000015973
I
0.868
ENSMEUG00000004239
Macropus eugenii
ENSMEUG00000004239
I
0.867
ENSONIG00000015972
Oreochromis niloticus
ENSONIG00000015972
I
0.865
CUX2
Taeniopygia guttata
ENSTGUG00000006470
I
0.865
cux2
Xenopus tropicalis
XB-GENE-487236
I
0.861
Ogr05872
Ophisaurus gracilis
Ogr05872
I
0.861
cux2b
Gasterosteus aculeatus
ENSGACG00000013522
I
0.861
cux2b
Tetraodon nigroviridis
ENSTNIG00000011453
I
0.861
ENSGMOG00000008990
Gadus morhua
ENSGMOG00000008990
I
0.859
ENSGMOG00000017485
Gadus morhua
ENSGMOG00000017485
I
0.858
ENSAPLG00000004382
Anas platyrhynchos
ENSAPLG00000004382
I
0.851
ENSTNIG00000007722
Tetraodon nigroviridis
ENSTNIG00000007722
I
0.845
ENSONIG00000003797
Oreochromis niloticus
ENSONIG00000003797
I
0.843
ENSXMAG00000018520
Xiphophorus maculatus
ENSXMAG00000018520
I
0.831
CUX1
Takifugu rubripes
ENSTRUG00000008546
I
0.830
ENSGACG00000009915
Gasterosteus aculeatus
ENSGACG00000009915
I
0.767
CUX2
Pan troglodytes
ENSPTRG00000005455
I
0.757
ENSGGOG00000016960
Gorilla gorilla
ENSGGOG00000016960
I
0.733