Afo_R002906 (Aptenodytes forsteri)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Afo_R002906 T174791_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
EBF3
M10461_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.891 0.891
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV

BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.842 0.842
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA

TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.842 0.842
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB

VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.842 0.842
Ebf2
M10467_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_01
0.796 0.796
Ebf4
M10468_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_01
0.769 0.769
EBF4
M10460_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.769 0.769
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R002906 EBF1 17 238

Links

Other EBF1 family TFs
Other Aptenodytes forsteri TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29737.m001209 Ricinus communis 29737.m001209 I 0.000
AMTR_s00065p00184910 Amborella trichopoda AMTR_s00065p00184910 I 0.000
Aquca_016_00200 Aquilegia coerulea Aquca_016_00200 I 0.000
BHLH66 Arabidopsis thaliana AT2G24260 I 0.000
LRL2 Arabidopsis thaliana AT4G30980 D 0.000
BHLH82 Arabidopsis thaliana AT5G58010 I 0.000
BGIOSGA021777 Oryza indica BGIOSGA021777 I 0.000
BGIOSGA029759 Oryza indica BGIOSGA029759 I 0.000
Bo1g011740 Brassica oleracea Bo1g011740 I 0.000
Bo2g028920 Brassica oleracea Bo2g028920 I 0.000
Bo3g018990 Brassica oleracea Bo3g018990 I 0.000
Bo4g154370 Brassica oleracea Bo4g154370 I 0.000
Bo8g099910 Brassica oleracea Bo8g099910 I 0.000
Bo9g133640 Brassica oleracea Bo9g133640 I 0.000
Bostr.26833s0448 Boechera stricta Bostr.26833s0448 I 0.000
Bostr.27895s0056 Boechera stricta Bostr.27895s0056 I 0.000
Bostr.7867s0954 Boechera stricta Bostr.7867s0954 I 0.000
Bra002679 Brassica rapa Bra002679 I 0.000
Bra006788 Brassica rapa Bra006788 I 0.000
Bra007863 Brassica rapa Bra007863 I 0.000
Bra011237 Brassica rapa Bra011237 I 0.000
Bra020398 Brassica rapa Bra020398 I 0.000
Bra032111 Brassica rapa Bra032111 I 0.000
BRADI1G47350 Brachypodium distachyon BRADI1G47350 I 0.000
BRADI4G30350 Brachypodium distachyon BRADI4G30350 I 0.000
Cagra.0380s0028 Capsella grandiflora Cagra.0380s0028 I 0.000
Cagra.2848s0086 Capsella grandiflora Cagra.2848s0086 I 0.000
Cagra.4091s0032 Capsella grandiflora Cagra.4091s0032 I 0.000
Carubv10005248m.g Capsella rubella Carubv10005248m.g I 0.000
Carubv10023532m.g Capsella rubella Carubv10023532m.g I 0.000
Carubv10028492m.g Capsella rubella Carubv10028492m.g I 0.000
cassava22164.valid.m1 Manihot esculenta cassava22164.valid.m1 I 0.000
cassava22165.valid.m1 Manihot esculenta cassava22165.valid.m1 I 0.000
Ca_03340 Cicer arietinum Ca_03340 I 0.000
chr6.CM0037.770.nc Lotus japonicus chr6.CM0037.770.nc I 0.000
Ciclev10008192m.g Citrus clementina Ciclev10008192m.g I 0.000
Cla013823 Citrullus lanatus Cla013823 I 0.000
Cla019007 Citrullus lanatus Cla019007 I 0.000
Cucsa.132830 Cucumis sativus Cucsa.132830 I 0.000
Cucsa.350940 Cucumis sativus Cucsa.350940 I 0.000
Eucgr.C00360 Eucalyptus grandis Eucgr.C00360 I 0.000
Eucgr.C02592 Eucalyptus grandis Eucgr.C02592 I 0.000
evm.TU.contig_30708.1 Carica papaya evm.TU.contig_30708.1 I 0.000
e_gw1.173.38.1 Physcomitrella patens e_gw1.173.38.1 I 0.000
e_gw1.209.40.1 Physcomitrella patens e_gw1.209.40.1 D 0.000
LRL3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001435 I 0.000
LRL1 Arabidopsis lyrata fgenesh2_kg.4__341__AT2G24260.1 I 0.000
LRL2 Arabidopsis lyrata fgenesh2_kg.7__1084__AT4G30980.1 I 0.000
gene10062-v1.0-hybrid Fragaria vesca gene10062-v1.0-hybrid I 0.000
GLYMA02G36380 Glycine max GLYMA02G36380 I 0.000
GLYMA09G14380 Glycine max GLYMA09G14380 I 0.000
GLYMA15G33020 Glycine max GLYMA15G33020 I 0.000
GLYMA17G08300 Glycine max GLYMA17G08300 I 0.000
Gorai.009G055200 Gossypium raimondii Gorai.009G055200 I 0.000
GRMZM2G027563 Zea mays GRMZM2G027563 I 0.000
GRMZM2G067654 Zea mays GRMZM2G067654 I 0.000
GSMUA_Achr10G24090_001 Musa acuminata GSMUA_Achr10G24090_001 I 0.000
GSMUA_Achr10G30710_001 Musa acuminata GSMUA_Achr10G30710_001 I 0.000
GSMUA_Achr4G01910_001 Musa acuminata GSMUA_Achr4G01910_001 I 0.000
LPERR02G29460 Leersia perrieri LPERR02G29460 I 0.000
LPERR09G07210 Leersia perrieri LPERR09G07210 I 0.000
Lus10021846.g Linum usitatissimum Lus10021846.g I 0.000
MDP0000121522 Malus domestica MDP0000121522 I 0.000
MDP0000534784 Malus domestica MDP0000534784 I 0.000
mgf001459m Mimulus guttatus mgf001459m I 0.000
mgf009435m Mimulus guttatus mgf009435m I 0.000
mgf014585m Mimulus guttatus mgf014585m I 0.000
MLOC_38567 Hordeum vulgare MLOC_38567 I 0.000
MTR_4g131160 Medicago truncatula MTR_4g131160 I 0.000
OB06G14990 Oryza brachyantha OB06G14990 I 0.000
OB09G16940 Oryza brachyantha OB09G16940 I 0.000
OBART06G05420 Oryza barthii OBART06G05420 I 0.000
OBART09G10360 Oryza barthii OBART09G10360 I 0.000
OGLUM02G37030 Oryza glumaepatula OGLUM02G37030 I 0.000
OGLUM06G05610 Oryza glumaepatula OGLUM06G05610 I 0.000
OGLUM09G10750 Oryza glumaepatula OGLUM09G10750 I 0.000
OMERI02G33790 Oryza meridionalis OMERI02G33790 I 0.000
OMERI09G08190 Oryza meridionalis OMERI09G08190 I 0.000
ONIVA02G37880 Oryza nivara ONIVA02G37880 I 0.000
ONIVA06G06250 Oryza nivara ONIVA06G06250 I 0.000
ONIVA09G10010 Oryza nivara ONIVA09G10010 I 0.000
orange1.1g012156m.g Citrus sinensis orange1.1g012156m.g I 0.000
ORGLA02G0311000 Oryza glaberrima ORGLA02G0311000 I 0.000
ORUFI02G37320 Oryza rufipogon ORUFI02G37320 I 0.000
ORUFI06G05560 Oryza rufipogon ORUFI06G05560 I 0.000
ORUFI09G11120 Oryza rufipogon ORUFI09G11120 I 0.000
OS06G0184000 Oryza sativa OS06G0184000 I 0.000
Pavir.Aa00205 Panicum virgatum Pavir.Aa00205 I 0.000
Pavir.Ab03158 Panicum virgatum Pavir.Ab03158 I 0.000
Pavir.Ba01914 Panicum virgatum Pavir.Ba01914 I 0.000
Pavir.Bb02117 Panicum virgatum Pavir.Bb02117 I 0.000
Pavir.Da02078 Panicum virgatum Pavir.Da02078 I 0.000
Pavir.J04712 Panicum virgatum Pavir.J04712 I 0.000
PGSC0003DMG400007827 Solanum tuberosum PGSC0003DMG400007827 I 0.000
PGSC0003DMG400011133 Solanum tuberosum PGSC0003DMG400011133 I 0.000
PK14040.1 Cannabis sativa PK14040.1 I 0.000
Pm027715 Prunus mume Pm027715 I 0.000
POPTR_0018s11800 Populus trichocarpa POPTR_0018s11800 I 0.000
PRUPE_ppa005254mg Prunus persica PRUPE_ppa005254mg I 0.000
SapurV1A.0100s0120 Salix purpurea SapurV1A.0100s0120 I 0.000
SapurV1A.0347s0080 Salix purpurea SapurV1A.0347s0080 I 0.000
Sb02g024750 Sorghum bicolor Sb02g024750 I 0.000
Sb04g035890 Sorghum bicolor Sb04g035890 I 0.000
Sb10g005650 Sorghum bicolor Sb10g005650 I 0.000
SELMODRAFT_422025 Selaginella moellendorffii SELMODRAFT_422025 I 0.000
SELMODRAFT_444782 Selaginella moellendorffii SELMODRAFT_444782 I 0.000
Si017553m.g Setaria italica Si017553m.g I 0.000
Si029708m.g Setaria italica Si029708m.g I 0.000
Solyc12g010170.1 Solanum lycopersicum Solyc12g010170.1 I 0.000
TCM_037077 Theobroma cacao TCM_037077 I 0.000
Thhalv10000220m.g Eutrema salsugineum Thhalv10000220m.g I 0.000
Thhalv10014212m.g Eutrema salsugineum Thhalv10014212m.g I 0.000
Thhalv10025656m.g Eutrema salsugineum Thhalv10025656m.g I 0.000
Traes_5BL_B820523A7 Triticum aestivum Traes_5BL_B820523A7 I 0.000
Traes_6AL_FD6EC5EA9 Triticum aestivum Traes_6AL_FD6EC5EA9 I 0.000
TRIUR3_33768 Triticum urartu TRIUR3_33768 I 0.000
VIT_11s0037g00040 Vitis vinifera VIT_11s0037g00040 I 0.000