Bra014292 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra014292 T191957_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN

NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.855 0.914
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG

CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.855 0.914
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN

NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.850 0.829
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN

NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.845 0.857
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA

TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.809 0.771
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra014292.1-P GATA 224 260

Links

Other GATA family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30055.m001588 Ricinus communis 30055.m001588 N 0.000
anac090 Arabidopsis lyrata fgenesh2_kg.6__2228__AT5G22380.1 N 0.000
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N 0.000
BGIOSGA022116 Oryza indica BGIOSGA022116 N 0.000
BGIOSGA037019 Oryza indica BGIOSGA037019 N 0.000
Bo2g023870 Brassica oleracea Bo2g023870 N 0.000
Bo3g016870 Brassica oleracea Bo3g016870 N 0.000
Bo9g148540 Brassica oleracea Bo9g148540 N 0.000
Bostr.26527s0039 Boechera stricta Bostr.26527s0039 N 0.000
Bra002408 Brassica rapa Bra002408 N 0.000
Bra006624 Brassica rapa Bra006624 N 0.000
Bra020188 Brassica rapa Bra020188 N 0.000
Cagra.0846s0014 Capsella grandiflora Cagra.0846s0014 N 0.000
Carubv10001788m.g Capsella rubella Carubv10001788m.g N 0.000
cassava13394.valid.m1 Manihot esculenta cassava13394.valid.m1 N 0.000
cassava14235.m1 Manihot esculenta cassava14235.m1 N 0.000
cassava15688.m1 Manihot esculenta cassava15688.m1 N 0.000
cassava32867.m1 Manihot esculenta cassava32867.m1 N 0.000
cassava3989.m1 Manihot esculenta cassava3989.m1 N 0.000
Ciclev10029032m.g Citrus clementina Ciclev10029032m.g N 0.000
Cla003087 Citrullus lanatus Cla003087 I 0.000
Cla008777 Citrullus lanatus Cla008777 N 0.000
Cla018691 Citrullus lanatus Cla018691 N 0.000
Cucsa.083530 Cucumis sativus Cucsa.083530 N 0.000
Cucsa.185760 Cucumis sativus Cucsa.185760 N 0.000
Cucsa.319840 Cucumis sativus Cucsa.319840 I 0.000
Eucgr.A02635 Eucalyptus grandis Eucgr.A02635 N 0.000
Eucgr.A02636 Eucalyptus grandis Eucgr.A02636 N 0.000
Eucgr.A02639 Eucalyptus grandis Eucgr.A02639 N 0.000
Eucgr.C02446 Eucalyptus grandis Eucgr.C02446 N 0.000
Eucgr.I00583 Eucalyptus grandis Eucgr.I00583 N 0.000
Eucgr.I00587 Eucalyptus grandis Eucgr.I00587 N 0.000
Eucgr.J00505 Eucalyptus grandis Eucgr.J00505 N 0.000
Eucgr.J00508 Eucalyptus grandis Eucgr.J00508 N 0.000
Eucgr.J00511 Eucalyptus grandis Eucgr.J00511 N 0.000
Eucgr.J00512 Eucalyptus grandis Eucgr.J00512 N 0.000
Eucgr.J00513 Eucalyptus grandis Eucgr.J00513 N 0.000
Eucgr.J00514 Eucalyptus grandis Eucgr.J00514 N 0.000
Eucgr.J00516 Eucalyptus grandis Eucgr.J00516 N 0.000
Eucgr.J00518 Eucalyptus grandis Eucgr.J00518 N 0.000
evm.TU.supercontig_195.14 Carica papaya evm.TU.supercontig_195.14 N 0.000
gene21734-v1.0-hybrid Fragaria vesca gene21734-v1.0-hybrid N 0.000
GLYMA12G31150 Glycine max GLYMA12G31150 N 0.000
GLYMA13G39160 Glycine max GLYMA13G39160 N 0.000
GLYMA19G38211 Glycine max GLYMA19G38211 N 0.000
Gorai.001G122800 Gossypium raimondii Gorai.001G122800 N 0.000
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N 0.000
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.000
GRMZM2G439903 Zea mays GRMZM2G439903 N 0.000
GRMZM2G465835 Zea mays GRMZM2G465835 N 0.000
GSMUA_Achr10G04720_001 Musa acuminata GSMUA_Achr10G04720_001 N 0.000
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N 0.000
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N 0.000
LPERR05G14390 Leersia perrieri LPERR05G14390 N 0.000
LPERR11G02950 Leersia perrieri LPERR11G02950 N 0.000
LPERR12G03220 Leersia perrieri LPERR12G03220 N 0.000
Lus10004846.g Linum usitatissimum Lus10004846.g N 0.000
Lus10020643.g Linum usitatissimum Lus10020643.g N 0.000
MDP0000130797 Malus domestica MDP0000130797 N 0.000
MDP0000205938 Malus domestica MDP0000205938 N 0.000
MDP0000759504 Malus domestica MDP0000759504 N 0.000
mgf020234m Mimulus guttatus mgf020234m N 0.000
MLOC_75297 Hordeum vulgare MLOC_75297 N 0.000
MTR_2g086690 Medicago truncatula MTR_2g086690 N 0.000
MTR_7g105170 Medicago truncatula MTR_7g105170 N 0.000
NAC090 Arabidopsis thaliana AT5G22380 N 0.000
OB12G13350 Oryza brachyantha OB12G13350 N 0.000
OBART06G00060 Oryza barthii OBART06G00060 N 0.000
OBART12G03440 Oryza barthii OBART12G03440 N 0.000
OGLUM06G00040 Oryza glumaepatula OGLUM06G00040 N 0.000
OGLUM12G04110 Oryza glumaepatula OGLUM12G04110 N 0.000
OLONG_004904 Oryza longistaminata OLONG_004904 N 0.000
OMERI06G00050 Oryza meridionalis OMERI06G00050 N 0.000
ONIVA06G00080 Oryza nivara ONIVA06G00080 N 0.000
ONIVA12G03060 Oryza nivara ONIVA12G03060 N 0.000
OPUNC06G00030 Oryza punctata OPUNC06G00030 N 0.000
OPUNC12G03240 Oryza punctata OPUNC12G03240 N 0.000
orange1.1g023996m.g Citrus sinensis orange1.1g023996m.g N 0.000
ORGLA06G0000500 Oryza glaberrima ORGLA06G0000500 N 0.000
ORGLA12G0033100 Oryza glaberrima ORGLA12G0033100 N 0.000
ORUFI06G00070 Oryza rufipogon ORUFI06G00070 N 0.000
OS06G0101800 Oryza sativa OS06G0101800 N 0.000
OS12G0156100 Oryza sativa OS12G0156100 N 0.000
PGSC0003DMG400026332 Solanum tuberosum PGSC0003DMG400026332 N 0.000
PK27925.1 Cannabis sativa PK27925.1 N 0.000
PK29014.1 Cannabis sativa PK29014.1 N 0.000
Pm001403 Prunus mume Pm001403 N 0.000
POPTR_0001s22630 Populus trichocarpa POPTR_0001s22630 N 0.000
POPTR_0009s02430 Populus trichocarpa POPTR_0009s02430 N 0.000
PRUPE_ppa010337mg Prunus persica PRUPE_ppa010337mg N 0.000
SapurV1A.0450s0140 Salix purpurea SapurV1A.0450s0140 N 0.000
SapurV1A.1671s0050 Salix purpurea SapurV1A.1671s0050 N 0.000
SapurV1A.3648s0010 Salix purpurea SapurV1A.3648s0010 N 0.000
SELMODRAFT_71307 Selaginella moellendorffii SELMODRAFT_71307 I 0.000
SELMODRAFT_86855 Selaginella moellendorffii SELMODRAFT_86855 I 0.000
Solyc09g010160.1 Solanum lycopersicum Solyc09g010160.1 N 0.000
Solyc11g068620.1 Solanum lycopersicum Solyc11g068620.1 N 0.000
TCM_041364 Theobroma cacao TCM_041364 N 0.000
Thhalv10014563m.g Eutrema salsugineum Thhalv10014563m.g N 0.000
Traes_4AL_22CE41C6F Triticum aestivum Traes_4AL_22CE41C6F N 0.000
VIT_18s0041g00700 Vitis vinifera VIT_18s0041g00700 N 0.000