Cla015736 (Citrullus lanatus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cla015736 T195881_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN

NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.861 0.889
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN

NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.861 0.833
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN

NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.850 0.861
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG

CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.850 0.861
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA

TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.814 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla015736 GATA 231 268

Links

Other GATA family TFs
Other Citrullus lanatus TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29838.m001724 Ricinus communis 29838.m001724 I 0.840
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.856
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.837
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.851
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.865
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.862
Bo1g039000 Brassica oleracea Bo1g039000 I 0.814
Bo1g108240 Brassica oleracea Bo1g108240 I 0.850
Bo3g181450 Brassica oleracea Bo3g181450 I 0.850
Bo5g103560 Brassica oleracea Bo5g103560 I 0.850
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.850
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.814
Bra013805 Brassica rapa Bra013805 I 0.814
Bra014292 Brassica rapa Bra014292 I 0.850
Bra023900 Brassica rapa Bra023900 I 0.850
Bra031258 Brassica rapa Bra031258 I 0.850
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.861
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.832
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.850
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.814
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.855
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.814
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.855
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.850
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.836
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.836
Ca_01471 Cicer arietinum Ca_01471 I 0.809
Ca_17522 Cicer arietinum Ca_17522 I 0.855
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.855
Cla013127 Citrullus lanatus Cla013127 I 0.837
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.836
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.865
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.855
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.855
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.850
F775_08559 Aegilops tauschii F775_08559 I 0.851
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.850
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.850
GATA17 Oryza sativa OS02G0148500 I 0.865
GATA24 Arabidopsis thaliana AT3G21175 D 0.861
GATA28 Arabidopsis thaliana AT1G51600 D 0.850
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.855
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.840
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.856
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.861
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.851
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.846
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.861
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.851
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.855
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.850
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.823
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.865
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.865
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.852
mgf016112m Mimulus guttatus mgf016112m I 0.846
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.845
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.851
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.814
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.824
OB02G13220 Oryza brachyantha OB02G13220 I 0.861
OB06G33840 Oryza brachyantha OB06G33840 I 0.865
OBART02G03780 Oryza barthii OBART02G03780 I 0.865
OBART06G26250 Oryza barthii OBART06G26250 I 0.861
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.865
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.861
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.861
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.865
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.862
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.865
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.861
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.861
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.861
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.856
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.865
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.861
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.865
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.861
OS06G0698900 Oryza sativa OS06G0698900 D 0.861
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.861
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.861
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.865
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.861
PK11000.1 Cannabis sativa PK11000.1 I 0.805
Pm013048 Prunus mume Pm013048 I 0.861
Pm022163 Prunus mume Pm022163 I 0.840
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.840
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.855
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.831
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.840
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.861
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.855
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.840
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.856
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.845
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.845
Si006750m.g Setaria italica Si006750m.g I 0.861
TCM_007360 Theobroma cacao TCM_007360 I 0.840
TCM_027858 Theobroma cacao TCM_027858 I 0.855
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.850
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.855
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.814
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.814
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.851
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.851
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.851
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.845
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.845
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.845
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.851
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.855
ZIM Arabidopsis thaliana AT4G24470 D 0.814
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.865
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.850