CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGLB002570
(
Biomphalaria glabrata
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03615 (GCM)
IPR003902
BGLB002570
T198230_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.657
0.657
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.657
0.657
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.657
0.657
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.657
0.657
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY
RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.621
0.621
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.621
0.621
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.621
0.621
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGLB002570-PA
GCM
7
146
HDPFELWPTGHSRRVYQADSDDARRHVSGWAMRNTNNHNALILKKSCLGVLVCSMDCMLESGRKVHLRPAICDKARRKQMGKPCPNPGCPGKLDLLSCRGHCGYPVTHFWRHVNRYVYFQAKGFHDHPRPEVKSLSEKGR
Links
Other
GCM
family TFs
Other
Biomphalaria glabrata
TFs
106 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy