CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000243351
(
Malus domestica
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
MDP0000243351
T202834_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000243351
GRAS
297
592
GFELINAPREFDRRDEDYGIAVRLLNQFSPIPKFVHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPRSQGIGESKQELNETRDRLAGFAGALNLPFEFHPVVDRLEDVRVWMLHVKEHESVAVNCVFQLHKTLYDMTGGALRDFLGLIRSTNPTIVLMAEQEAEHNEARLETRVSNSLKYYSAIFDSIGSSLPLGSQARIKVEEMFAREIRNIVACEGSDRLERHESFEKWRKWMEQGGFRCAGITEREMLQSQFLLKMYANESYAVKKQEQDGAAGALTLSWMDRPLYTVSAWT
Links
Other
GRAS
family TFs
Other
Malus domestica
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000915100
Malus domestica
MDP0000915100
N
0.955
PRUPE_ppa017030mg
Prunus persica
PRUPE_ppa017030mg
N
0.859
VIT_02s0025g04000
Vitis vinifera
VIT_02s0025g04000
N
0.804
30190.m011131
Ricinus communis
30190.m011131
N
0.794
cassava2243.valid.m1
Manihot esculenta
cassava2243.valid.m1
N
0.784
TCM_016186
Theobroma cacao
TCM_016186
N
0.784
cassava41178.m1
Manihot esculenta
cassava41178.m1
N
0.780
Ciclev10019186m.g
Citrus clementina
Ciclev10019186m.g
N
0.777
POPTR_0001s08850
Populus trichocarpa
POPTR_0001s08850
N
0.766
PK26305.1
Cannabis sativa
PK26305.1
N
0.756
Eucgr.D01917
Eucalyptus grandis
Eucgr.D01917
N
0.756
PGSC0003DMG400003047
Solanum tuberosum
PGSC0003DMG400003047
N
0.753
Solyc08g080400.1
Solanum lycopersicum
Solyc08g080400.1
N
0.749
GLYMA05G03490
Glycine max
GLYMA05G03490
N
0.735
Lus10029592.g
Linum usitatissimum
Lus10029592.g
N
0.715
Aquca_013_00407
Aquilegia coerulea
Aquca_013_00407
N
0.715
GLYMA17G14030
Glycine max
GLYMA17G14030
N
0.708
LjSGA_020116.2
Lotus japonicus
LjSGA_020116.2
N
0.703