CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CapteG223738
(
Capitella teleta
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
CapteG223738
T205443_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PBX3
M08132_2.00
Homo sapiens
NNNTGAGTGACAGSNNN
NNNSCTGTCACTCANNN
ChIP-seq
Mathelier et al.(2014)
MA1114.1
0.671
0.783
PBX3
M07971_2.00
Homo sapiens
NNBDRCCAATSRVVD
HBBYSATTGGYHVNN
ChIP-seq
Gerstein et al.(2012)
GM12878_PBX3_HudsonAlpha
0.671
0.783
PBX3
M09155_2.00
Homo sapiens
DGABKGRCRGB
VCYGYCMVTCH
Misc
Kulakovskiy et al.(2013)
PBX3_HUMAN.H11MO.0.A
0.671
0.783
PBX3
M09560_2.00
Homo sapiens
NTGABTGACAGB
VCTGTCAVTCAN
Misc
Heinz et al.(2010)
GM12878-PBX3_GSE32465
0.671
0.783
PBX3
M10732_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_02
0.671
0.783
PBX3
M10733_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_03
0.671
0.783
PBX3
M10734_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_04
0.671
0.783
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CapteP223738
Homeodomain
243
296
RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELARKCQITVSQVSLFFIKR
CapteP223738
Homeodomain
312
330
SVCGQVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Capitella teleta
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CRE23691
Caenorhabditis remanei
CRE23691
I
0.672
PBX3
Procavia capensis
ENSPCAG00000006303
I
0.671
pbx3b
Oryzias latipes
ENSORLG00000013269
I
0.671
ENSP00000362586-D3
Bos grunniens
ENSP00000362586-D3
I
0.671
PBX3
Homo sapiens
ENSG00000167081
D
0.671
ENSP00000362586
Macaca fascicularis
ENSP00000362586
I
0.671
TsM_000683000
Taenia solium
TsM_000683000
I
0.668
PBX3
Pteropus vampyrus
ENSPVAG00000000742
I
0.661
PBX1
Oryctolagus cuniculus
ENSOCUG00000007609
I
0.661
ENSNLEG00000017398
Nomascus leucogenys
ENSNLEG00000017398
I
0.661
PBX3
Gorilla gorilla
ENSGGOG00000009025
I
0.661
PBX1
Myotis lucifugus
ENSMLUG00000006941
I
0.660
ENSAMEG00000016625
Ailuropoda melanoleuca
ENSAMEG00000016625
I
0.651
pbx3b
Gasterosteus aculeatus
ENSGACG00000011999
I
0.650
pbx3b
Takifugu rubripes
ENSTRUG00000008751
I
0.644
CGI_10026001
Crassostrea gigas
CGI_10026001
N
0.609
PBX2
Echinops telfairi
ENSETEG00000018718
I
0.607
pbx1b
Takifugu rubripes
ENSTRUG00000007203
I
0.599