ENSSSCG00000009315 (Sus scrofa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSSSCG00000009315 T215818_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pdx1
M00446_2.00 		Mus musculus
NWRAYNNN
NNNRTYWN		 PBM
Berger et al.(2008)
Ipf1_3815 		0.633 1.000
PDX1
M03155_2.00 		Homo sapiens
NTAATTRNNNYTAATTRN
NYAATTARNNNYAATTAN		 SELEX
Jolma et al.(2013)
PDX1_1 		0.633 1.000
PDX1
M03156_2.00 		Homo sapiens
BTAATKRN
NYMATTAV		 SELEX
Jolma et al.(2013)
PDX1_2 		0.633 1.000
PDX1
M05161_2.00 		Homo sapiens
YTAATKRB
VYMATTAR		 SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX 		0.633 1.000
PDX1
M09147_2.00 		Homo sapiens
TGATWGATK
MATCWATCA		 Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A 		0.633 1.000
Pdx1
M09192_2.00 		Mus musculus
VYTAATGRB
VYCATTARB		 Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B 		0.633 1.000
Pdx1
M09571_2.00 		Mus musculus
TGATTRATKR
YMATYAATCA		 Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281 		0.633 1.000
PDX1
M10699_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_01 		0.633 1.000
PDX1
M10700_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_02 		0.633 1.000
PDX1
M10701_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_03 		0.633 1.000
PDX1
M10702_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_04 		0.633 1.000
PDX1
M10703_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_05 		0.633 1.000
PDX1
M10704_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q4_01 		0.633 1.000
PDX1
M10705_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q4 		0.633 1.000
PDX1
M10706_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q5_01 		0.633 1.000
PDX1
M10707_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q5 		0.633 1.000
PDX1
M10708_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IPF1_Q6 		0.633 1.000
PDX1
M05162_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1 		0.633 1.000
PDX1
M05163_2.00 		Homo sapiens
YTAATKRB
VYMATTAR		 SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2 		0.633 1.000
SPU_026099
M02175_2.00 		Strongylocentrotus purpuratus
KTAATTRB
VYAATTAM		 PBM
Weirauch et al.(2014)
pTH6140 		0.633 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000009939 Homeodomain 148 203

Links

Other Homeodomain family TFs
Other Sus scrofa TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nRc.2.0.1.g07191 Romanomermis culicivorax nRc.2.0.1.g07191 I 0.762
HOXB2 Sorex araneus ENSSARG00000008539 I 0.747
ENSNLEG00000015091 Nomascus leucogenys ENSNLEG00000015091 I 0.655
ALX4 Taeniopygia guttata ENSTGUG00000010263 I 0.642
ENSBTAP00000014141-D1 Bos grunniens ENSBTAP00000014141-D1 I 0.633
PDX1 Otolemur garnettii ENSOGAG00000016688 I 0.633
PDX1 Ochotona princeps ENSOPRG00000011346 I 0.633
Cmyd_10006637 Chelonia mydas Cmyd_10006637 I 0.633
ENSPANG00000012683 Papio anubis ENSPANG00000012683 I 0.633
ENSP00000370421 Macaca fascicularis ENSP00000370421 I 0.633
PDX1 Monodelphis domestica ENSMODG00000009015 I 0.633
Pdx1 Mus musculus ENSMUSG00000029644 D 0.633
ENSNLEG00000000362 Nomascus leucogenys ENSNLEG00000000362 I 0.633
ENSPCAG00000014347 Procavia capensis ENSPCAG00000014347 I 0.633
Ogr19214 Ophisaurus gracilis Ogr19214 I 0.633
ENSMPUG00000005147 Mustela putorius furo ENSMPUG00000005147 I 0.633
ENSPPYG00000005240 Pongo abelii ENSPPYG00000005240 I 0.633
ENSSTOG00000028173 Ictidomys tridecemlineatus ENSSTOG00000028173 I 0.633
ENSSSCG00000009312 Sus scrofa ENSSSCG00000009312 I 0.633
PDX1 Tupaia belangeri ENSTBEG00000014859 I 0.633
ENSTGUG00000011604 Taeniopygia guttata ENSTGUG00000011604 I 0.633
LotgiG100678 Lottia gigantea LotgiG100678 I 0.633
ENSSHAG00000017812 Sarcophilus harrisii ENSSHAG00000017812 I 0.633
Pdx1 Rattus norvegicus ENSRNOG00000046458 I 0.633
ENSMMUG00000016136 Macaca mulatta ENSMMUG00000016136 I 0.633
ENSPSIG00000012283 Pelodiscus sinensis ENSPSIG00000012283 I 0.633
PDX1 Pan troglodytes ENSPTRG00000005736 I 0.633
PDX1 Pteropus vampyrus ENSPVAG00000011521 I 0.633
SPU_026099 Strongylocentrotus purpuratus SPU_026099 D 0.633
ENSMICG00000010178 Microcebus murinus ENSMICG00000010178 I 0.633
CAA34746 Xenopus laevis CAA34746 I 0.633
ENSCSAG00000017977 Chlorocebus sabaeus ENSCSAG00000017977 I 0.633
Ocbimv22032498m.g Octopus bimaculoides Ocbimv22032498m.g I 0.633
Pdx1 Dipodomys ordii ENSDORG00000008418 I 0.633
PDX1 Equus caballus ENSECAG00000000679 I 0.633
PDX1 Callithrix jacchus ENSCJAG00000019393 I 0.633
PDX1 Choloepus hoffmanni ENSCHOG00000006329 I 0.633
pdx1 Xenopus tropicalis XB-GENE-483331 I 0.633
ENSAMEG00000002418 Ailuropoda melanoleuca ENSAMEG00000002418 I 0.633
ENSAPLG00000005982 Anas platyrhynchos ENSAPLG00000005982 I 0.633
PDX1 Bos taurus ENSBTAG00000010690 I 0.633
PDX1 Canis familiaris ENSCAFG00000006746 I 0.633
PDX1 Erinaceus europaeus ENSEEUG00000007501 I 0.633
PDX1 Echinops telfairi ENSETEG00000004114 I 0.633
ENSLACG00000016610 Latimeria chalumnae ENSLACG00000016610 I 0.633
ENSLACG00000008420 Latimeria chalumnae ENSLACG00000008420 I 0.633
ENSLOCG00000004260 Lepisosteus oculatus ENSLOCG00000004260 I 0.633
PDX1 Meleagris gallopavo ENSMGAG00000015099 I 0.633
PDX1 Tursiops truncatus ENSTTRG00000002811 I 0.633
Pvit_11742 Pogona vitticeps Pvit_11742 I 0.633
PDX1 Gorilla gorilla ENSGGOG00000002569 I 0.633
PDX1 Felis catus ENSFCAG00000010351 I 0.633
ENSFALG00000008588 Ficedula albicollis ENSFALG00000008588 I 0.633
PDX1 Homo sapiens ENSG00000139515 D 0.633
gw.24.415.1 Branchiostoma floridae gw.24.415.1 I 0.633
ENSGALG00000022726 Gallus gallus ENSGALG00000022726 I 0.633
ENSCING00000000991 Ciona intestinalis ENSCING00000000991 I 0.628
PDX1 Myotis lucifugus ENSMLUG00000010639 I 0.625
PDX1 Oryctolagus cuniculus ENSOCUG00000004891 I 0.623
PDX1 Anolis carolinensis ENSACAG00000003305 I 0.622
HelroG100536 Helobdella robusta HelroG100536 I 0.621
pdx1 Danio rerio ENSDARG00000002779 I 0.620
Sakowv30038073m.g Saccoglossus kowalevskii Sakowv30038073m.g I 0.617
pdx1 Tetraodon nigroviridis ENSTNIG00000012708 I 0.617
CapteG196539 Capitella teleta CapteG196539 I 0.616
pdx1 Oryzias latipes ENSORLG00000008765 I 0.615
ENSPFOG00000007668 Poecilia formosa ENSPFOG00000007668 I 0.615
ENSXMAG00000019562 Xiphophorus maculatus ENSXMAG00000019562 I 0.615
ENSONIG00000014137 Oreochromis niloticus ENSONIG00000014137 I 0.615
pdx1 Gasterosteus aculeatus ENSGACG00000003099 I 0.615
ENSGMOG00000015225 Gadus morhua ENSGMOG00000015225 I 0.615
pdx1 Takifugu rubripes ENSTRUG00000005693 I 0.615
ENSCSAVG00000008872 Ciona savignyi ENSCSAVG00000008872 I 0.612
ENSAMXG00000014404 Astyanax mexicanus ENSAMXG00000014404 I 0.611
ENSOARG00000012459 Ovis aries ENSOARG00000012459 I 0.611
AAA85027 Xenopus laevis AAA85027 I 0.302