CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSTNIG00000004116
(
Tetraodon nigroviridis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSTNIG00000004116
T216421_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ENSTNIG00000004116
M02105_2.00
Tetraodon nigroviridis
TTAATTAG
CTAATTAA
PBM
Weirauch et al.(2014)
pTH6772
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFHX3
M01849_2.00
Homo sapiens
NNNRMTNDN
NHNAKYNNN
PBM
Weirauch et al.(2014)
pTH6494
0.759
0.667
Q4RRY4_TETNG
M02169_2.00
Tetraodon nigroviridis
NNYAATYAN
NTRATTRNN
PBM
Weirauch et al.(2014)
pTH6326
0.602
0.404
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02105_2.00
Homeodomain
1
57
RSSRTRFTEKQLETLQGVFEATPYPREEEYDRLSALLSLPNRVIVVWFQNARQRARK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000006733
Homeodomain
985
1041
RSSRTRFTEKQLETLQGVFEATPYPREEEYDRLSALLSLPNRVIVVWFQNARQRARK
Links
Other
Homeodomain
family TFs
Other
Tetraodon nigroviridis
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy