CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1329s0011
(
Capsella grandiflora
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Cagra.1329s0011
T228206_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1329s0011.1.p
Homeodomain
2
55
KRKSPEQVQALDAFYLAGKMYPTSREMEDLGKSLGLTVKEVSGWFKRRRSRGKG
Links
Other
Homeodomain
family TFs
Other
Capsella grandiflora
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10004029m.g
Capsella rubella
Carubv10004029m.g
N
0.867
Bostr.2021s0009
Boechera stricta
Bostr.2021s0009
N
0.824
AT4G12750
Arabidopsis thaliana
AT4G12750
N
0.799
Thhalv10024262m.g
Eutrema salsugineum
Thhalv10024262m.g
N
0.711