PAX3 (Ochotona princeps)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSOPRG00000004223 T237440_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX3
M00358_2.00
Homo sapiens
NRTNNNN

NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.841 0.841
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA

TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.841 0.841
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN

NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.841 0.841
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST

ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.841 0.841
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN

NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.841 0.841
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN

NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.841 0.841
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN

NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.841 0.841
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN

NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.841 0.841
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM

KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.841 0.841
PAX3
M10817_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.841 0.841
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN

NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.841 0.841
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN

NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.841 0.841
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN

NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.841 0.841
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN

NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.841 0.841
PAX3
M00352_2.00
Homo sapiens
VNTAATYR

YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.834 0.834
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN

NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.834 0.834
PAX3
M00354_2.00
Homo sapiens
NNNRYNN

NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.834 0.834
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.834 0.834
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN

NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.834 0.834
PAX3
M00359_2.00
Homo sapiens
NTAATYRV

BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.834 0.834
Pax7
M00541_2.00
Mus musculus
NNVATTWN

NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.795 0.795
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA

TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.795 0.795
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA

TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.795 0.795
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR

YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.795 0.795
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN

NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.795 0.795
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.795 0.795
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN

NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.795 0.795
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.795 0.795
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.795 0.795
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN

NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.795 0.795
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN

NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.795 0.795
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA

TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.795 0.795
Pax7
M09588_2.00
Mus musculus
TAATTGATTW

WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.795 0.795
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN

NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.795 0.795
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN

NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.795 0.795
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN

NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.795 0.795
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN

NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.795 0.795
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN

NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.795 0.795
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN

NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.795 0.795
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000003904 Paired box 32 157
ENSOPRP00000003904 Homeodomain 244 274

Links

Other Homeodomain,Paired box family TFs
Other Ochotona princeps TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PAX3 Monodelphis domestica ENSMODG00000021190 I 0.841
Pax3 Mus musculus ENSMUSG00000004872 I 0.841
ENSNLEG00000009611 Nomascus leucogenys ENSNLEG00000009611 I 0.841
PAX3 Oryctolagus cuniculus ENSOCUG00000017507 I 0.841
PAX3 Macaca mulatta ENSMMUG00000020409 I 0.841
PAX3 Myotis lucifugus ENSMLUG00000014155 I 0.841
PAX3 Loxodonta africana ENSLAFG00000008041 I 0.841
ENSMEUG00000013628 Macropus eugenii ENSMEUG00000013628 I 0.841
PAX3 Microcebus murinus ENSMICG00000000336 I 0.841
PAX3 Otolemur garnettii ENSOGAG00000001304 I 0.841
ENSPANG00000008818 Papio anubis ENSPANG00000008818 I 0.841
PAX3 Tupaia belangeri ENSTBEG00000010268 I 0.841
ENSBTAP00000013131-D1 Bos grunniens ENSBTAP00000013131-D1 I 0.841
ENSP00000375921 Macaca fascicularis ENSP00000375921 I 0.841
ENSSTOG00000008650 Ictidomys tridecemlineatus ENSSTOG00000008650 I 0.841
ENSSHAG00000016542 Sarcophilus harrisii ENSSHAG00000016542 I 0.841
ENSPPYG00000013219 Pongo abelii ENSPPYG00000013219 I 0.841
PAX3 Pan troglodytes ENSPTRG00000012969 I 0.841
Pax3 Rattus norvegicus ENSRNOG00000013670 I 0.841
PAX3 Gorilla gorilla ENSGGOG00000015636 I 0.841
ENSMPUG00000016673 Mustela putorius furo ENSMPUG00000016673 I 0.841
PAX3 Felis catus ENSFCAG00000018967 I 0.841
PAX3 Canis familiaris ENSCAFG00000016041 I 0.841
PAX3 Callithrix jacchus ENSCJAG00000012088 I 0.841
PAX3 Cavia porcellus ENSCPOG00000006276 I 0.841
PAX3 Equus caballus ENSECAG00000014549 I 0.841
ENSCSAG00000007841 Chlorocebus sabaeus ENSCSAG00000007841 I 0.841
PAX3 Homo sapiens ENSG00000135903 D 0.841
PAX3 Bos taurus ENSBTAG00000009950 I 0.841
ENSAMEG00000007444 Ailuropoda melanoleuca ENSAMEG00000007444 I 0.841
Myotis_brandtii_Pax3_10032963 Myotis brandtii Myotis_brandtii_Pax3_10032963 I 0.834
PAX3 Sus scrofa ENSSSCG00000028418 I 0.834
PAX3 Dasypus novemcinctus ENSDNOG00000001871 I 0.834
ENSOARG00000020289 Ovis aries ENSOARG00000020289 I 0.828
ENSPSIG00000005535 Pelodiscus sinensis ENSPSIG00000005535 I 0.828
PAX3 Anolis carolinensis ENSACAG00000004981 I 0.828
ENSLACG00000006342 Latimeria chalumnae ENSLACG00000006342 I 0.828
Pvit_18803 Pogona vitticeps Pvit_18803 I 0.828
ENSLOCG00000004189 Lepisosteus oculatus ENSLOCG00000004189 I 0.815
pax3a Danio rerio ENSDARG00000010192 I 0.808
ENSAMXG00000024811 Astyanax mexicanus ENSAMXG00000024811 I 0.801
PAX7 Gasterosteus aculeatus ENSGACG00000001703 I 0.801
ENSPFOG00000013988 Poecilia formosa ENSPFOG00000013988 I 0.801
ENSAMXG00000003799 Astyanax mexicanus ENSAMXG00000003799 I 0.801
pax7b Danio rerio ENSDARG00000070818 I 0.801
pax7a Takifugu rubripes ENSTRUG00000015245 I 0.801
ENSLOCG00000003864 Lepisosteus oculatus ENSLOCG00000003864 I 0.801
ENSGMOG00000001549 Gadus morhua ENSGMOG00000001549 I 0.801
pax7a Tetraodon nigroviridis ENSTNIG00000014797 I 0.801
pax7a Danio rerio ENSDARG00000100398 I 0.801
ENSONIG00000014283 Oreochromis niloticus ENSONIG00000014283 I 0.801
PAX3 Tetraodon nigroviridis ENSTNIG00000014313 I 0.801
pax3 Xenopus tropicalis XB-GENE-482740 I 0.801
PAX7 Oryzias latipes ENSORLG00000004269 I 0.801
PAX7 Ochotona princeps ENSOPRG00000007352 I 0.795
pax7a Gasterosteus aculeatus ENSGACG00000012890 I 0.795
ENSCSAG00000000870 Chlorocebus sabaeus ENSCSAG00000000870 I 0.788
ENSLACG00000019159 Latimeria chalumnae ENSLACG00000019159 I 0.781
PAX3 Tursiops truncatus ENSTTRG00000000379 I 0.781
PAX3 Echinops telfairi ENSETEG00000006800 I 0.781
ENSGMOG00000006159 Gadus morhua ENSGMOG00000006159 I 0.775
ENSTSYG00000009638 Tarsius syrichta ENSTSYG00000009638 I 0.775
PAX7 Equus caballus ENSECAG00000020207 I 0.775
PAX3 Tetraodon nigroviridis ENSTNIG00000015279 I 0.768
fgenesh2_kg.scaffold_259000002 Branchiostoma floridae fgenesh2_kg.scaffold_259000002 I 0.762
fgenesh2_kg.scaffold_211000002 Branchiostoma floridae fgenesh2_kg.scaffold_211000002 I 0.762
ENSPFOG00000007769 Poecilia formosa ENSPFOG00000007769 I 0.762
ENSXMAG00000012884 Xiphophorus maculatus ENSXMAG00000012884 I 0.748
ENSPFOG00000016934 Poecilia formosa ENSPFOG00000016934 I 0.735
CGI_10026438 Crassostrea gigas CGI_10026438 I 0.715
pax3.L Xenopus laevis XB-GENE-6252072 I 0.713
ENSCSAVG00000004794 Ciona savignyi ENSCSAVG00000004794 I 0.709
CLEC002253 Cimex lectularius CLEC002253 I 0.709