CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PAX3
(
Ochotona princeps
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSOPRG00000004223
T237440_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX3
M00358_2.00
Homo sapiens
NRTNNNN
NNNNAYN
PBM
Barrera et al.(2016)
PAX3_REF
0.841
0.841
PAX3
M03297_2.00
Homo sapiens
TAATYRATTA
TAATYRATTA
SELEX
Jolma et al.(2013)
PAX3_1
0.841
0.841
PAX3
M03885_2.00
Homo sapiens
NNTAATYGATTANN
NNTAATCRATTANN
SELEX
Nitta et al.(2015)
PAX3_1
0.841
0.841
PAX3
M03886_2.00
Homo sapiens
RATTMGTCACGST
ASCGTGACKAATY
SELEX
Nitta et al.(2015)
PAX3_2
0.841
0.841
PAX3
M05438_2.00
Homo sapiens
NSGTCACGSHHATTAN
NTAATDDSCGTGACSN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_1
0.841
0.841
PAX3
M05439_2.00
Homo sapiens
NDAATCRATTMN
NKAATYGATTHN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_2
0.841
0.841
PAX3
M05440_2.00
Homo sapiens
NBRATTMGTCACGSHN
NDSCGTGACKAATYVN
SELEX
Yin et al.(2017)
PAX3_eDBD_HT-SELEX_3
0.841
0.841
PAX3
M09585_2.00
Homo sapiens
WSYRTGACWAATBNN
NNVATTWGTCAYRSW
Misc
Heinz et al.(2010)
Rh4-PAX3_FKHR_GSE19063
0.841
0.841
PAX3
M10816_2.00
Homo sapiens
TCGTCACRCHYHM
KDRDGYGTGACGA
Transfac
Matys et al.(2006)
V$PAX3_01
0.841
0.841
PAX3
M10817_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX3_B
0.841
0.841
PAX3
M00356_2.00
Homo sapiens
NNKWCAYDDWN
NWHHRTGWMNN
PBM
Barrera et al.(2016)
PAX3_R270C
0.841
0.841
PAX3
M05441_2.00
Homo sapiens
NNGTCACGSHWRTTAN
NTAAYWDSCGTGACNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_1
0.841
0.841
PAX3
M05442_2.00
Homo sapiens
NWAATCRATTAN
NTAATYGATTWN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_2
0.841
0.841
PAX3
M05443_2.00
Homo sapiens
NNRATTVGTCRCGSHN
NDSCGYGACBAATYNN
SELEX
Yin et al.(2017)
PAX3_eDBD_Methyl-HT-SELEX_3
0.841
0.841
PAX3
M00352_2.00
Homo sapiens
VNTAATYR
YRATTANB
PBM
Barrera et al.(2016)
PAX3_G48R
0.834
0.834
PAX3
M00353_2.00
Homo sapiens
NNNNRTNNN
NNNAYNNNN
PBM
Barrera et al.(2016)
PAX3_N47H
0.834
0.834
PAX3
M00354_2.00
Homo sapiens
NNNRYNN
NNRYNNN
PBM
Barrera et al.(2016)
PAX3_N47K
0.834
0.834
PAX3
M00355_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_P50L
0.834
0.834
PAX3
M00357_2.00
Homo sapiens
NNNATNWNN
NNWNATNNN
PBM
Barrera et al.(2016)
PAX3_R56L
0.834
0.834
PAX3
M00359_2.00
Homo sapiens
NTAATYRV
BYRATTAN
PBM
Barrera et al.(2016)
PAX3_Y90H
0.834
0.834
Pax7
M00541_2.00
Mus musculus
NNVATTWN
NWAATBNN
PBM
Berger et al.(2008)
Pax7_3783
0.795
0.795
PAX7
M03292_2.00
Homo sapiens
WAATYRATTA
TAATYRATTW
SELEX
Jolma et al.(2013)
PAX7_1
0.795
0.795
PAX7
M03293_2.00
Homo sapiens
TAATYGATTA
TAATCRATTA
SELEX
Jolma et al.(2013)
PAX7_2
0.795
0.795
PAX7
M05416_2.00
Homo sapiens
NDSCGTGACGAATYR
YRATTCGTCACGSHN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_1
0.795
0.795
PAX7
M05417_2.00
Homo sapiens
NSGTCACGSHWRTTAN
NTAAYWDSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_2
0.795
0.795
PAX7
M05418_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_HT-SELEX_3
0.795
0.795
PAX7
M05422_2.00
Homo sapiens
BVATTMGTCACGSHN
NDSCGTGACKAATBV
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_1
0.795
0.795
PAX7
M05423_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_2
0.795
0.795
PAX7
M05424_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_HT-SELEX_3
0.795
0.795
PAX7
M05874_2.00
Homo sapiens
ATTMGTYACGSHN
NDSCGTRACKAAT
SMiLE-seq
Isakova et al.(2017)
PAX7
0.795
0.795
Pax7
M09586_2.00
Mus musculus
NNNNNYAATTDNNHAATTAN
NTAATTDNNHAATTRNNNNN
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_1
0.795
0.795
Pax7
M09587_2.00
Mus musculus
DTAATYDGATTA
TAATCHRATTAH
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_2
0.795
0.795
Pax7
M09588_2.00
Mus musculus
TAATTGATTW
WAATCAATTA
Misc
Heinz et al.(2010)
Myoblast-Pax7_GSE25064_3
0.795
0.795
PAX7
M05419_2.00
Homo sapiens
NVATTVGTCRCGSYN
NRSCGYGACBAATBN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_1
0.795
0.795
PAX7
M05420_2.00
Homo sapiens
NNGTCACGSHHRTTAN
NTAAYDDSCGTGACNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_2
0.795
0.795
PAX7
M05421_2.00
Homo sapiens
NNAATCRATTWN
NWAATYGATTNN
SELEX
Yin et al.(2017)
PAX7_eDBD_Methyl-HT-SELEX_3
0.795
0.795
PAX7
M05425_2.00
Homo sapiens
YRATTMGTCACGSHN
NDSCGTGACKAATYR
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_1
0.795
0.795
PAX7
M05426_2.00
Homo sapiens
NSGTCACGSYWATTAN
NTAATWRSCGTGACSN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_2
0.795
0.795
PAX7
M05427_2.00
Homo sapiens
NTAATYGATTAN
NTAATCRATTAN
SELEX
Yin et al.(2017)
PAX7_FL_Methyl-HT-SELEX_3
0.795
0.795
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000003904
Paired box
32
157
GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILR
ENSOPRP00000003904
Homeodomain
244
274
XXXXXELAQRAKLTEARVQVWFSNRRARWRK
Links
Other
Homeodomain,Paired box
family TFs
Other
Ochotona princeps
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PAX3
Monodelphis domestica
ENSMODG00000021190
I
0.841
Pax3
Mus musculus
ENSMUSG00000004872
I
0.841
ENSNLEG00000009611
Nomascus leucogenys
ENSNLEG00000009611
I
0.841
PAX3
Oryctolagus cuniculus
ENSOCUG00000017507
I
0.841
PAX3
Macaca mulatta
ENSMMUG00000020409
I
0.841
PAX3
Myotis lucifugus
ENSMLUG00000014155
I
0.841
PAX3
Loxodonta africana
ENSLAFG00000008041
I
0.841
ENSMEUG00000013628
Macropus eugenii
ENSMEUG00000013628
I
0.841
PAX3
Microcebus murinus
ENSMICG00000000336
I
0.841
PAX3
Otolemur garnettii
ENSOGAG00000001304
I
0.841
ENSPANG00000008818
Papio anubis
ENSPANG00000008818
I
0.841
PAX3
Tupaia belangeri
ENSTBEG00000010268
I
0.841
ENSBTAP00000013131-D1
Bos grunniens
ENSBTAP00000013131-D1
I
0.841
ENSP00000375921
Macaca fascicularis
ENSP00000375921
I
0.841
ENSSTOG00000008650
Ictidomys tridecemlineatus
ENSSTOG00000008650
I
0.841
ENSSHAG00000016542
Sarcophilus harrisii
ENSSHAG00000016542
I
0.841
ENSPPYG00000013219
Pongo abelii
ENSPPYG00000013219
I
0.841
PAX3
Pan troglodytes
ENSPTRG00000012969
I
0.841
Pax3
Rattus norvegicus
ENSRNOG00000013670
I
0.841
PAX3
Gorilla gorilla
ENSGGOG00000015636
I
0.841
ENSMPUG00000016673
Mustela putorius furo
ENSMPUG00000016673
I
0.841
PAX3
Felis catus
ENSFCAG00000018967
I
0.841
PAX3
Canis familiaris
ENSCAFG00000016041
I
0.841
PAX3
Callithrix jacchus
ENSCJAG00000012088
I
0.841
PAX3
Cavia porcellus
ENSCPOG00000006276
I
0.841
PAX3
Equus caballus
ENSECAG00000014549
I
0.841
ENSCSAG00000007841
Chlorocebus sabaeus
ENSCSAG00000007841
I
0.841
PAX3
Homo sapiens
ENSG00000135903
D
0.841
PAX3
Bos taurus
ENSBTAG00000009950
I
0.841
ENSAMEG00000007444
Ailuropoda melanoleuca
ENSAMEG00000007444
I
0.841
Myotis_brandtii_Pax3_10032963
Myotis brandtii
Myotis_brandtii_Pax3_10032963
I
0.834
PAX3
Sus scrofa
ENSSSCG00000028418
I
0.834
PAX3
Dasypus novemcinctus
ENSDNOG00000001871
I
0.834
ENSOARG00000020289
Ovis aries
ENSOARG00000020289
I
0.828
ENSPSIG00000005535
Pelodiscus sinensis
ENSPSIG00000005535
I
0.828
PAX3
Anolis carolinensis
ENSACAG00000004981
I
0.828
ENSLACG00000006342
Latimeria chalumnae
ENSLACG00000006342
I
0.828
Pvit_18803
Pogona vitticeps
Pvit_18803
I
0.828
ENSLOCG00000004189
Lepisosteus oculatus
ENSLOCG00000004189
I
0.815
pax3a
Danio rerio
ENSDARG00000010192
I
0.808
ENSAMXG00000024811
Astyanax mexicanus
ENSAMXG00000024811
I
0.801
PAX7
Gasterosteus aculeatus
ENSGACG00000001703
I
0.801
ENSPFOG00000013988
Poecilia formosa
ENSPFOG00000013988
I
0.801
ENSAMXG00000003799
Astyanax mexicanus
ENSAMXG00000003799
I
0.801
pax7b
Danio rerio
ENSDARG00000070818
I
0.801
pax7a
Takifugu rubripes
ENSTRUG00000015245
I
0.801
ENSLOCG00000003864
Lepisosteus oculatus
ENSLOCG00000003864
I
0.801
ENSGMOG00000001549
Gadus morhua
ENSGMOG00000001549
I
0.801
pax7a
Tetraodon nigroviridis
ENSTNIG00000014797
I
0.801
pax7a
Danio rerio
ENSDARG00000100398
I
0.801
ENSONIG00000014283
Oreochromis niloticus
ENSONIG00000014283
I
0.801
PAX3
Tetraodon nigroviridis
ENSTNIG00000014313
I
0.801
pax3
Xenopus tropicalis
XB-GENE-482740
I
0.801
PAX7
Oryzias latipes
ENSORLG00000004269
I
0.801
PAX7
Ochotona princeps
ENSOPRG00000007352
I
0.795
pax7a
Gasterosteus aculeatus
ENSGACG00000012890
I
0.795
ENSCSAG00000000870
Chlorocebus sabaeus
ENSCSAG00000000870
I
0.788
ENSLACG00000019159
Latimeria chalumnae
ENSLACG00000019159
I
0.781
PAX3
Tursiops truncatus
ENSTTRG00000000379
I
0.781
PAX3
Echinops telfairi
ENSETEG00000006800
I
0.781
ENSGMOG00000006159
Gadus morhua
ENSGMOG00000006159
I
0.775
ENSTSYG00000009638
Tarsius syrichta
ENSTSYG00000009638
I
0.775
PAX7
Equus caballus
ENSECAG00000020207
I
0.775
PAX3
Tetraodon nigroviridis
ENSTNIG00000015279
I
0.768
fgenesh2_kg.scaffold_259000002
Branchiostoma floridae
fgenesh2_kg.scaffold_259000002
I
0.762
fgenesh2_kg.scaffold_211000002
Branchiostoma floridae
fgenesh2_kg.scaffold_211000002
I
0.762
ENSPFOG00000007769
Poecilia formosa
ENSPFOG00000007769
I
0.762
ENSXMAG00000012884
Xiphophorus maculatus
ENSXMAG00000012884
I
0.748
ENSPFOG00000016934
Poecilia formosa
ENSPFOG00000016934
I
0.735
CGI_10026438
Crassostrea gigas
CGI_10026438
I
0.715
pax3.L
Xenopus laevis
XB-GENE-6252072
I
0.713
ENSCSAVG00000004794
Ciona savignyi
ENSCSAVG00000004794
I
0.709
CLEC002253
Cimex lectularius
CLEC002253
I
0.709