Sakowv30026828m.g (Saccoglossus kowalevskii)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
Sakowv30026828m.g T237736_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN

NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.908 0.908
Pax6
M00540_2.00
Mus musculus
CBAATTAA

TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.908 0.908
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH

DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.945 0.945
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN

NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.945 0.945
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN

NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.945 0.945
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK

MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.945 0.945
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.945 0.945
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT

ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.908 0.908
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH

DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.908 0.908
PAX6
M10807_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.908 0.908
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN

NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.945 0.945
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN

NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.945 0.945
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN

NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.940 0.940
PAX6
M00336_2.00
Homo sapiens
RTGCACAC

GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.940 0.940
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.940 0.940
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR

YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.902 0.902
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN

NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.902 0.902
PAX6
M00340_2.00
Homo sapiens
NNNNNRN

NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.902 0.902
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC

GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.940 0.940
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN

NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.940 0.940
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN

NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.940 0.940
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD

HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.923 0.923
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD

HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.923 0.923
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN

NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.897 0.897
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN

NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.885 0.885
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN

NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.885 0.885
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN

NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.907 0.907
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23949264_peptide Paired box 28 152
23949264_peptide Homeodomain 254 310
23949265_peptide Paired box 28 152
23949265_peptide Homeodomain 254 310
23949266_peptide Paired box 28 152
23949266_peptide Homeodomain 254 310
23949267_peptide Paired box 28 152
23949267_peptide Homeodomain 254 310
23949268_peptide Paired box 28 152
23949268_peptide Homeodomain 242 290
23949269_peptide Paired box 11 135
23949269_peptide Homeodomain 237 293

Links

Other Homeodomain,Paired box family TFs
Other Saccoglossus kowalevskii TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL012330 Aedes aegypti AAEL012330 I 0.000
AALB006989 Anopheles albimanus AALB006989 I 0.000
Aan_R001616 Calypte anna Aan_R001616 I 0.000
AARA005418 Anopheles arabiensis AARA005418 I 0.000
AATE010335 Anopheles atroparvus AATE010335 I 0.000
ACEP14716 Atta cephalotes ACEP14716 I 0.000
ACHR004528 Anopheles christyi ACHR004528 I 0.000
ACOM022852 Anopheles coluzzii ACOM022852 I 0.000
ACUA022207 Anopheles culicifacies ACUA022207 I 0.000
ACYPI001633 Acyrthosiphon pisum ACYPI001633 I 0.000
ADAC000533 Anopheles darlingi ADAC000533 I 0.000
ADIR004511 Anopheles dirus ADIR004511 I 0.000
AEPI009613 Anopheles epiroticus AEPI009613 I 0.000
AFAF020957 Anopheles farauti AFAF020957 I 0.000
Afo_R014360 Aptenodytes forsteri Afo_R014360 I 0.000
AFUN000514 Anopheles funestus AFUN000514 I 0.000
AGAP010958 Anopheles gambiae AGAP010958 I 0.000
Alligator_sinensis_CCG004402.1 Alligator sinensis Alligator_sinensis_CCG004402.1 I 0.000
AMEM009001 Anopheles merus AMEM009001 I 0.000
AMIN009249 Anopheles minimus AMIN009249 I 0.000
ANCCAN_21534 Ancylostoma caninum ANCCAN_21534 I 0.000
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.000
AQUA001233 Anopheles quadriannulatus AQUA001233 I 0.000
ASIS007912 Anopheles sinensis ASIS007912 I 0.000
ASTEI09026 Anopheles stephensi ASTEI09026 I 0.000
BGIBMGA010619 Bombyx mori BGIBMGA010619 I 0.000
BGLB001531 Biomphalaria glabrata BGLB001531 I 0.000
BN7_431 Wickerhamomyces ciferrii BN7_431 I 0.000
CANTEDRAFT_116365 Candida tenuis CANTEDRAFT_116365 I 0.000
CapteG209597 Capitella teleta CapteG209597 I 0.000
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.000
CLUG_05066 Candida lusitaniae CLUG_05066 I 0.000
CLUG_05066 Clavispora lusitaniae CLUG_05066 I 0.000
CPIJ007600 Culex quinquefasciatus CPIJ007600 I 0.000
CPIJ018368 Culex quinquefasciatus CPIJ018368 I 0.000
CpipJ_CPIJ007600 Culex pipiens CpipJ_CPIJ007600 I 0.000
CpipJ_CPIJ018368 Culex pipiens CpipJ_CPIJ018368 I 0.000
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.000
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.000
DEHA2G11836g Debaryomyces hansenii DEHA2G11836g I 0.000
DILT_0000075001 Diphyllobothrium latum DILT_0000075001 I 0.000
E5Q_00411 Mixia osmundae E5Q_00411 I 0.000
ECANG7_01777 Echinococcus canadensis ECANG7_01777 I 0.000
EDP41991.1 Malassezia globosa EDP41991.1 I 0.000
EmuJ_000972300 Echinococcus multilocularis EmuJ_000972300 I 0.000
ENSBTAG00000002545 Bos taurus ENSBTAG00000002545 I 0.000
ENSBTAG00000046809 Bos taurus ENSBTAG00000046809 I 0.000
ENSBTAP00000003296-D1 Bos grunniens ENSBTAP00000003296-D1 I 0.000
TBPL2 Erinaceus europaeus ENSEEUG00000008616 I 0.000
ENSFALG00000003735 Ficedula albicollis ENSFALG00000003735 I 0.000
TBPL2 Gallus gallus ENSGALG00000012145 I 0.000
ENSLACG00000019034 Latimeria chalumnae ENSLACG00000019034 I 0.000
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.000
Tbp Mus musculus ENSMUSG00000014767 D 0.000
ENSOANG00000022637 Ornithorhynchus anatinus ENSOANG00000022637 I 0.000
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.000
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.000
ENSPSIG00000010865 Pelodiscus sinensis ENSPSIG00000010865 I 0.000
TBPL2 Taeniopygia guttata ENSTGUG00000013070 I 0.000
Eucgr.J01752 Eucalyptus grandis Eucgr.J01752 I 0.000
Tbp Drosophila melanogaster FBgn0003687 I 0.000
Tbp Drosophila virilis FBgn0041651 I 0.000
GA22088 Drosophila pseudoobscura FBgn0082072 I 0.000
GF11627 Drosophila ananassae FBgn0088667 I 0.000
GG20753 Drosophila erecta FBgn0112940 I 0.000
GH23121 Drosophila grimshawi FBgn0130578 I 0.000
GI18943 Drosophila mojavensis FBgn0141682 I 0.000
GL11271 Drosophila persimilis FBgn0148880 I 0.000
GM15696 Drosophila sechellia FBgn0170612 I 0.000
GD25175 Drosophila simulans FBgn0196487 I 0.000
GJ14917 Drosophila virilis FBgn0202120 I 0.000
GK10649 Drosophila willistoni FBgn0212662 I 0.000
GE13685 Drosophila yakuba FBgn0231340 I 0.000
GB47180 Apis mellifera GB47180 I 0.000
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.000
GNLVRS01_PISO0E08584g Millerozyma farinosa GNLVRS01_PISO0E08584g I 0.000
GNLVRS01_PISO0F09927g Millerozyma farinosa GNLVRS01_PISO0F09927g I 0.000
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.000
GYMLUDRAFT_48721 Gymnopus luxurians GYMLUDRAFT_48721 I 0.000
HDID_0000848301 Hymenolepis diminuta HDID_0000848301 I 0.000
HelroG86082 Helobdella robusta HelroG86082 I 0.000
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.000
HMEL016424 Heliconius melpomene HMEL016424 I 0.000
HmN_000119900 Hymenolepis microstoma HmN_000119900 I 0.000
HNAJ_0000219201 Hymenolepis nana HNAJ_0000219201 I 0.000
Hsal_00478--XP_623088.1_APIME Harpegnathos saltator Hsal_00478--XP_623088.1_APIME I 0.000
ISCW019416 Ixodes scapularis ISCW019416 I 0.000
JAAARDRAFT_628099 Jaapia argillacea JAAARDRAFT_628099 I 0.000
KGM_04261 Danaus plexippus KGM_04261 I 0.000
L798_11200 Zootermopsis nevadensis L798_11200 I 0.000
LCUP012241 Lucilia cuprina LCUP012241 I 0.000
LDEC008856 Leptinotarsa decemlineata LDEC008856 I 0.000
LLOJ006615 Lutzomyia longipalpis LLOJ006615 I 0.000
LotgiG129673 Lottia gigantea LotgiG129673 I 0.000
M404DRAFT_1000909 Pisolithus tinctorius M404DRAFT_1000909 I 0.000
M408DRAFT_329006 Serendipita vermifera M408DRAFT_329006 I 0.000
M413DRAFT_438675 Hebeloma cylindrosporum M413DRAFT_438675 I 0.000
M438DRAFT_342525 Aureobasidium pullulans M438DRAFT_342525 I 0.000
MCINX007129 Melitaea cinxia MCINX007129 I 0.000
MCOS_0000245001 Mesocestoides corti MCOS_0000245001 I 0.000
MDOA014641 Musca domestica MDOA014641 I 0.000
MELLADRAFT_75016 Melampsora laricipopulina MELLADRAFT_75016 I 0.000
Myotis_brandtii_TBPL2_10011178 Myotis brandtii Myotis_brandtii_TBPL2_10011178 I 0.000
Ocbimv22013703m.g Octopus bimaculoides Ocbimv22013703m.g I 0.000
OFLC_0000347601 Onchocerca flexuosa OFLC_0000347601 I 0.000
PAS_chr1-4_0183 Komagataella pastoris PAS_chr1-4_0183 I 0.000
PGTG_01493 Puccinia graminis PGTG_01493 I 0.000
PGUG_04298 Meyerozyma guilliermondii PGUG_04298 I 0.000
PGUG_04298 Candida guilliermondii PGUG_04298 I 0.000
PHUM533080 Pediculus humanus PHUM533080 I 0.000
PK25605.1 Cannabis sativa PK25605.1 I 0.000
PNEG_00724 Pneumocystis murina PNEG_00724 I 0.000
PPAI004956 Phlebotomus papatasi PPAI004956 I 0.000
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I 0.000
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I 0.000
PTTG_01229 Puccinia triticina PTTG_01229 I 0.000
PTTG_06059 Puccinia triticina PTTG_06059 I 0.000
Pvit_04001 Pogona vitticeps Pvit_04001 I 0.000
RO3G_15549 Rhizopus oryzae RO3G_15549 I 0.000
Sakowv30026288m.g Saccoglossus kowalevskii Sakowv30026288m.g I 0.000
Si023295m.g Setaria italica Si023295m.g I 0.000
SINV24483 Solenopsis invicta SINV24483 I 0.000
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I 0.000
SMU15013179 Schmidtea mediterranea SMU15013179 I 0.000
SPER_0002022601 Spirometra erinaceieuropaei SPER_0002022601 I 0.000
SPER_0003100001 Spirometra erinaceieuropaei SPER_0003100001 I 0.000
SPU_012621 Strongylocentrotus purpuratus SPU_012621 I 0.000
SPU_014099 Strongylocentrotus purpuratus SPU_014099 I 0.000
SVUK_0000188301 Strongylus vulgaris SVUK_0000188301 I 0.000
TC008403 Tribolium castaneum TC008403 I 0.000
TELCIR_11261 Teladorsagia circumcincta TELCIR_11261 I 0.000
TsM_000071900 Taenia solium TsM_000071900 I 0.000
TTAC_0000978001 Hydatigera taeniaeformis TTAC_0000978001 I 0.000
tbpl2 Xenopus tropicalis XB-GENE-876138 I 0.000
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.000
XP_002490297.1 Pichia pastoris XP_002490297.1 I 0.000
YQE_02631 Dendroctonus ponderosae YQE_02631 I 0.000